- text = new FeaturesFile().printJalviewFormat(
- ap.av.getAlignment().getDataset().getSequencesArray(),
- displayedFeatureColours, true, ap.av.isShowNPFeats()); // ap.av.featuresDisplayed);
- text = formatter.printJalviewFormat(sequences, featureColours, true,
- includeNonPositional);
+ text = formatter.printJalviewFormat(sequences, featureColours,
+ featureGroups, includeNonPositional);