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Watch out for - symbol lin jnet files
[jalview.git]
/
src
/
jalview
/
gui
/
AnnotationLabels.java
diff --git
a/src/jalview/gui/AnnotationLabels.java
b/src/jalview/gui/AnnotationLabels.java
index
4268353
..
4d73aa6
100755
(executable)
--- a/
src/jalview/gui/AnnotationLabels.java
+++ b/
src/jalview/gui/AnnotationLabels.java
@@
-400,7
+400,11
@@
public class AnnotationLabels extends JPanel implements MouseListener,
SequenceI [] dseqs=new SequenceI[] { sq.getDatasetSequence()};
if (dseqs[0]==null) {
dseqs[0] = new Sequence(sq);
SequenceI [] dseqs=new SequenceI[] { sq.getDatasetSequence()};
if (dseqs[0]==null) {
dseqs[0] = new Sequence(sq);
- dseqs[0].setSequence(jalview.analysis.AlignSeq.extractGaps(jalview.util.Comparison.GapChars, sq.getSequence()));
+ dseqs[0].setSequence(
+ jalview.analysis.AlignSeq.extractGaps(
+ jalview.util.Comparison.GapChars,
+ sq.getSequenceAsString()));
+
sq.setDatasetSequence(dseqs[0]);
}
Alignment ds=new Alignment(dseqs);
sq.setDatasetSequence(dseqs[0]);
}
Alignment ds=new Alignment(dseqs);