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JAL-3070 pushed down JABAWS specific args for WsJobParameters to Jws2Client
[jalview.git]
/
src
/
jalview
/
gui
/
AnnotationLabels.java
diff --git
a/src/jalview/gui/AnnotationLabels.java
b/src/jalview/gui/AnnotationLabels.java
index
2e70ca1
..
b1a8aff
100755
(executable)
--- a/
src/jalview/gui/AnnotationLabels.java
+++ b/
src/jalview/gui/AnnotationLabels.java
@@
-457,13
+457,15
@@
public class AnnotationLabels extends JPanel
if (!ann.groupRef.isUseInfoLetterHeight())
{
ann.groupRef.setIgnoreBelowBackground(cbmi.getState());
if (!ann.groupRef.isUseInfoLetterHeight())
{
ann.groupRef.setIgnoreBelowBackground(cbmi.getState());
+ // todo and recompute group annotation
}
}
else if (!ap.av.isInfoLetterHeight())
{
ap.av.setIgnoreBelowBackground(cbmi.getState(), ap);
}
}
else if (!ap.av.isInfoLetterHeight())
{
ap.av.setIgnoreBelowBackground(cbmi.getState(), ap);
+ // todo and recompute annotation
}
}
- ap.alignmentChanged();
+ ap.alignmentChanged(); // todo not like this
}
});
pop.add(cbmi);
}
});
pop.add(cbmi);
@@
-480,11
+482,13
@@
public class AnnotationLabels extends JPanel
{
ann.groupRef.setInfoLetterHeight((letterHeight.getState()));
ann.groupRef.setIgnoreBelowBackground(true);
{
ann.groupRef.setInfoLetterHeight((letterHeight.getState()));
ann.groupRef.setIgnoreBelowBackground(true);
+ // todo and recompute group annotation
}
else
{
ap.av.setInfoLetterHeight(letterHeight.getState(), ap);
ap.av.setIgnoreBelowBackground(true, ap);
}
else
{
ap.av.setInfoLetterHeight(letterHeight.getState(), ap);
ap.av.setIgnoreBelowBackground(true, ap);
+ // todo and recompute annotation
}
ap.alignmentChanged();
}
}
ap.alignmentChanged();
}
@@
-513,7
+517,7
@@
public class AnnotationLabels extends JPanel
@Override
public void actionPerformed(ActionEvent e)
{
@Override
public void actionPerformed(ActionEvent e)
{
- ann.groupRef.setshowHMMSequenceLogo(cprofl.getState());
+ ann.groupRef.setShowHMMSequenceLogo(cprofl.getState());
ap.repaint();
}
});
ap.repaint();
}
});
@@
-529,7
+533,7
@@
public class AnnotationLabels extends JPanel
ann.groupRef
.setNormaliseHMMSequenceLogo(cproflnorm.getState());
// automatically enable logo display if we're clicked
ann.groupRef
.setNormaliseHMMSequenceLogo(cproflnorm.getState());
// automatically enable logo display if we're clicked
- ann.groupRef.setshowHMMSequenceLogo(true);
+ ann.groupRef.setShowHMMSequenceLogo(true);
ap.repaint();
}
});
ap.repaint();
}
});