+ String saveStateNameTemp = "JalviewSaveStateTemp";
+ jmb.executeCommand(
+ new StructureCommand("save STATE " + saveStateNameTemp),
+ false);
+
+ if (extraCommands != null)
+ {
+ for (String cmd : extraCommands)
+ {
+ jmb.executeCommand(new StructureCommand(cmd), false);
+ }
+ }
+