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Merge branch 'features/JAL-1605_html-svg-export' into develop
[jalview.git]
/
src
/
jalview
/
gui
/
AppJmol.java
diff --git
a/src/jalview/gui/AppJmol.java
b/src/jalview/gui/AppJmol.java
index
5cc174a
..
09b0fdd
100644
(file)
--- a/
src/jalview/gui/AppJmol.java
+++ b/
src/jalview/gui/AppJmol.java
@@
-315,9
+315,9
@@
public class AppJmol extends GStructureViewer implements Runnable,
// TODO : Fix multiple seq to one chain issue here.
ap.getStructureSelectionManager().setMapping(seq, chains,
alreadyMapped, AppletFormatAdapter.FILE);
// TODO : Fix multiple seq to one chain issue here.
ap.getStructureSelectionManager().setMapping(seq, chains,
alreadyMapped, AppletFormatAdapter.FILE);
- if (ap.seqPanel.seqCanvas.fr != null)
+ if (ap.getSeqPanel().seqCanvas.fr != null)
{
{
- ap.seqPanel.seqCanvas.fr.featuresAdded();
+ ap.getSeqPanel().seqCanvas.fr.featuresAdded();
ap.paintAlignment(true);
}
ap.paintAlignment(true);
}
@@
-998,33
+998,42
@@
public class AppJmol extends GStructureViewer implements Runnable,
@Override
public void eps_actionPerformed(ActionEvent e)
{
@Override
public void eps_actionPerformed(ActionEvent e)
{
- makePDBImage(jalview.util.ImageMaker.EPS);
+ makePDBImage(jalview.util.ImageMaker.TYPE.EPS);
}
@Override
public void png_actionPerformed(ActionEvent e)
{
}
@Override
public void png_actionPerformed(ActionEvent e)
{
- makePDBImage(jalview.util.ImageMaker.PNG);
+ makePDBImage(jalview.util.ImageMaker.TYPE.PNG);
}
}
- void makePDBImage(int type)
+ void makePDBImage(jalview.util.ImageMaker.TYPE type)
{
int width = getWidth();
int height = getHeight();
jalview.util.ImageMaker im;
{
int width = getWidth();
int height = getHeight();
jalview.util.ImageMaker im;
- if (type == jalview.util.ImageMaker.PNG)
+ if (type == jalview.util.ImageMaker.TYPE.PNG)
{
{
- im = new jalview.util.ImageMaker(this, jalview.util.ImageMaker.PNG,
+ im = new jalview.util.ImageMaker(this,
+ jalview.util.ImageMaker.TYPE.PNG,
"Make PNG image from view", width, height, null, null);
}
"Make PNG image from view", width, height, null, null);
}
- else
+ else if (type == jalview.util.ImageMaker.TYPE.EPS)
{
{
- im = new jalview.util.ImageMaker(this, jalview.util.ImageMaker.EPS,
+ im = new jalview.util.ImageMaker(this,
+ jalview.util.ImageMaker.TYPE.EPS,
"Make EPS file from view", width, height, null,
this.getTitle());
}
"Make EPS file from view", width, height, null,
this.getTitle());
}
+ else
+ {
+
+ im = new jalview.util.ImageMaker(this,
+ jalview.util.ImageMaker.TYPE.SVG, "Make SVG file from PCA",
+ width, height, null, this.getTitle());
+ }
if (im.getGraphics() != null)
{
if (im.getGraphics() != null)
{
@@
-1065,7
+1074,7
@@
public class AppJmol extends GStructureViewer implements Runnable,
// Set the colour using the current view for the associated alignframe
for (AlignmentPanel ap : _colourwith)
{
// Set the colour using the current view for the associated alignframe
for (AlignmentPanel ap : _colourwith)
{
- jmb.colourBySequence(ap.av.showSequenceFeatures, ap);
+ jmb.colourBySequence(ap.av.isShowSequenceFeatures(), ap);
}
}
}
}
}
}