-
- jmb = new AppJmolBinding(this, new PDBEntry[]
- { pdbentry }, new SequenceI[][]
- { seq }, null, null);
+ openNewJmol(ap, new PDBEntry[] { pdbentry }, new SequenceI[][] { seq });
+ }
+ private void openNewJmol(AlignmentPanel ap, PDBEntry[] pdbentrys, SequenceI[][] seqs) {
+ boolean promptUser=pdbentrys.length==1;
+ progressBar = ap.alignFrame;
+ jmb = new AppJmolBinding(this, ap.getStructureSelectionManager(), pdbentrys, seqs, null, null);