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instant update when seq colour is pressed
[jalview.git]
/
src
/
jalview
/
gui
/
AppJmol.java
diff --git
a/src/jalview/gui/AppJmol.java
b/src/jalview/gui/AppJmol.java
index
ad8b54c
..
c082463
100644
(file)
--- a/
src/jalview/gui/AppJmol.java
+++ b/
src/jalview/gui/AppJmol.java
@@
-413,6
+413,7
@@
public synchronized void addSequence(SequenceI [] seq)
public void seqColour_actionPerformed(ActionEvent actionEvent)
{
public void seqColour_actionPerformed(ActionEvent actionEvent)
{
+ lastCommand = null;
colourBySequence = seqColour.isSelected();
colourBySequence(ap.alignFrame.alignPanel);
}
colourBySequence = seqColour.isSelected();
colourBySequence(ap.alignFrame.alignPanel);
}
@@
-588,17
+589,13
@@
public synchronized void addSequence(SequenceI [] seq)
resetLastRes.append(":" + chain);
}
resetLastRes.append(":" + chain);
}
- eval.append(";wireframe 100");//color gold;
+ eval.append(";wireframe 100;"+eval.toString()+".CA;");
- // Color col = new Color(viewer.getAtomArgb(atomIndex));
+ resetLastRes.append(";wireframe 0;"+resetLastRes.toString()+".CA;spacefill 0;");
- resetLastRes.append(";wireframe 0;select none;");//color["
- // + col.getRed() + ","
- // + col.getGreen() + ","
- // + col.getBlue() + "];
+ eval.append("spacefill 200;select none");
viewer.evalStringQuiet(eval.toString());
viewer.evalStringQuiet(eval.toString());
-
}
public Color getColour(int atomIndex, int pdbResNum, String chain, String pdbfile)
}
public Color getColour(int atomIndex, int pdbResNum, String chain, String pdbfile)
@@
-847,7
+844,8
@@
public synchronized void addSequence(SequenceI [] seq)
if (chainId != null)
picked+=(":"+chainId.substring(1, chainId.length()));
if (chainId != null)
picked+=(":"+chainId.substring(1, chainId.length()));
- picked+=".C";
+ picked+=".CA";
+
if (!atomsPicked.contains(picked))
{
if (!atomsPicked.contains(picked))
{