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JAL-3609 changed property names to something more palatable and catered for portrait...
[jalview.git]
/
src
/
jalview
/
gui
/
AppJmolBinding.java
diff --git
a/src/jalview/gui/AppJmolBinding.java
b/src/jalview/gui/AppJmolBinding.java
index
f822358
..
724cec1
100644
(file)
--- a/
src/jalview/gui/AppJmolBinding.java
+++ b/
src/jalview/gui/AppJmolBinding.java
@@
-41,13
+41,20
@@
public class AppJmolBinding extends JalviewJmolBinding
private AppJmol appJmolWindow;
public AppJmolBinding(AppJmol appJmol, StructureSelectionManager sSm,
private AppJmol appJmolWindow;
public AppJmolBinding(AppJmol appJmol, StructureSelectionManager sSm,
- PDBEntry[] pdbentry, SequenceI[][] sequenceIs, DataSourceType protocol)
+ PDBEntry[] pdbentry, SequenceI[][] sequenceIs,
+ DataSourceType protocol)
{
super(sSm, pdbentry, sequenceIs, protocol);
appJmolWindow = appJmol;
}
@Override
{
super(sSm, pdbentry, sequenceIs, protocol);
appJmolWindow = appJmol;
}
@Override
+ protected IProgressIndicator getIProgressIndicator()
+ {
+ return appJmolWindow.progressBar;
+ }
+
+ @Override
public SequenceRenderer getSequenceRenderer(AlignmentViewPanel alignment)
{
return new SequenceRenderer(((AlignmentPanel) alignment).av);
public SequenceRenderer getSequenceRenderer(AlignmentViewPanel alignment)
{
return new SequenceRenderer(((AlignmentPanel) alignment).av);
@@
-198,8
+205,9
@@
public class AppJmolBinding extends JalviewJmolBinding
public jalview.api.FeatureRenderer getFeatureRenderer(
AlignmentViewPanel alignment)
{
public jalview.api.FeatureRenderer getFeatureRenderer(
AlignmentViewPanel alignment)
{
- AlignmentPanel ap = (alignment == null) ? appJmolWindow
- .getAlignmentPanel() : (AlignmentPanel) alignment;
+ AlignmentPanel ap = (alignment == null)
+ ? appJmolWindow.getAlignmentPanel()
+ : (AlignmentPanel) alignment;
if (ap.av.isShowSequenceFeatures())
{
return ap.av.getAlignPanel().getSeqPanel().seqCanvas.fr;
if (ap.av.isShowSequenceFeatures())
{
return ap.av.getAlignPanel().getSeqPanel().seqCanvas.fr;