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Merge branch 'bug/JAL-2821' into develop
[jalview.git]
/
src
/
jalview
/
gui
/
AppVarna.java
diff --git
a/src/jalview/gui/AppVarna.java
b/src/jalview/gui/AppVarna.java
index
1bbe8d8
..
ea16f23
100644
(file)
--- a/
src/jalview/gui/AppVarna.java
+++ b/
src/jalview/gui/AppVarna.java
@@
-628,11
+628,10
@@
public class AppVarna extends JInternalFrame
ShiftList offset = new ShiftList();
int ofstart = -1;
int sleng = seq.getLength();
ShiftList offset = new ShiftList();
int ofstart = -1;
int sleng = seq.getLength();
- char[] seqChars = seq.getSequence();
for (int i = 0; i < sleng; i++)
{
for (int i = 0; i < sleng; i++)
{
- if (Comparison.isGap(seqChars[i]))
+ if (Comparison.isGap(seq.getCharAt(i)))
{
if (ofstart == -1)
{
{
if (ofstart == -1)
{