git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
JAL-674 initial implementation - only need to extract PDB id from file, no SS transfe...
[jalview.git]
/
src
/
jalview
/
gui
/
AssociatePdbFileWithSeq.java
diff --git
a/src/jalview/gui/AssociatePdbFileWithSeq.java
b/src/jalview/gui/AssociatePdbFileWithSeq.java
index
01f1cb0
..
ce75821
100644
(file)
--- a/
src/jalview/gui/AssociatePdbFileWithSeq.java
+++ b/
src/jalview/gui/AssociatePdbFileWithSeq.java
@@
-44,10
+44,12
@@
public class AssociatePdbFileWithSeq
SequenceI sequence, boolean prompt)
{
PDBEntry entry = new PDBEntry();
SequenceI sequence, boolean prompt)
{
PDBEntry entry = new PDBEntry();
+ MCview.PDBfile pdbfile = null;
try
{
try
{
- MCview.PDBfile pdbfile = new MCview.PDBfile(choice, protocol);
-
+ // TODO JAL-674 extract secondary structure and transfer it to associated
+ // sequence
+ pdbfile = new MCview.PDBfile(false, false, choice, protocol);
if (pdbfile.id == null)
{
String reply = null;
if (pdbfile.id == null)
{
String reply = null;