+ TreeCalculator treeCalculator = new TreeCalculator(treeAlgo,
+ substitutionMatrix, params);
+ TreeBuilder calculatedTree = treeCalculator
+ .makeTree(af.getViewport());
+ TreeModel tree = new TreeModel(calculatedTree);
+ openTreePanel(tree, treeAlgo, substitutionMatrix);
+
+ ArchaeopteryxTreeBuilder aptxTree = new ArchaeopteryxTreeBuilder(
+ tree);
+