- ArchaeopteryxTreeBuilder aptxTreeBuilder = new ArchaeopteryxTreeBuilder();
- Phylogeny aptxTree = aptxTreeBuilder.buildAptxTree(calculatedTree);
- MainFrame aptxFrame = Archaeopteryx.createApplication(aptxTree);
+ openTreePanel(tree, treeAlgo, substitutionMatrix);
+ ArchaeopteryxInit.createInstance(calculatedTree);