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JAL-2668 add tests for HMMER commands, annotation and io
[jalview.git]
/
src
/
jalview
/
gui
/
CrossRefAction.java
diff --git
a/src/jalview/gui/CrossRefAction.java
b/src/jalview/gui/CrossRefAction.java
index
cb315d6
..
7768b22
100644
(file)
--- a/
src/jalview/gui/CrossRefAction.java
+++ b/
src/jalview/gui/CrossRefAction.java
@@
-37,6
+37,8
@@
import jalview.ws.SequenceFetcher;
import java.util.ArrayList;
import java.util.List;
import java.util.ArrayList;
import java.util.List;
+import javax.swing.JOptionPane;
+
/**
* Factory constructor and runnable for discovering and displaying
* cross-references for a set of aligned sequences
/**
* Factory constructor and runnable for discovering and displaying
* cross-references for a set of aligned sequences
@@
-119,6
+121,10
@@
public class CrossRefAction implements Runnable
xrefsAlignment.getSequencesArray());
if (copyAlignment.getHeight() == 0)
{
xrefsAlignment.getSequencesArray());
if (copyAlignment.getHeight() == 0)
{
+ JvOptionPane.showMessageDialog(alignFrame,
+ MessageManager.getString("label.cant_map_cds"),
+ MessageManager.getString("label.operation_failed"),
+ JvOptionPane.OK_OPTION);
System.err.println("Failed to make CDS alignment");
}
System.err.println("Failed to make CDS alignment");
}
@@
-186,8
+192,9
@@
public class CrossRefAction implements Runnable
{
newFrame.hideFeatureColumns(SequenceOntologyI.EXON, false);
}
{
newFrame.hideFeatureColumns(SequenceOntologyI.EXON, false);
}
- String newtitle = String.format("%s %s %s", MessageManager
- .getString(dna ? "label.proteins" : "label.nucleotides"),
+ String newtitle = String.format("%s %s %s",
+ dna ? MessageManager.getString("label.proteins")
+ : MessageManager.getString("label.nucleotides"),
MessageManager.getString("label.for"), alignFrame.getTitle());
newFrame.setTitle(newtitle);
MessageManager.getString("label.for"), alignFrame.getTitle());
newFrame.setTitle(newtitle);