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JAL-3821 ported to refactored FlatFile parser
[jalview.git]
/
src
/
jalview
/
gui
/
CutAndPasteTransfer.java
diff --git
a/src/jalview/gui/CutAndPasteTransfer.java
b/src/jalview/gui/CutAndPasteTransfer.java
index
7b8ade6
..
3f64ff1
100644
(file)
--- a/
src/jalview/gui/CutAndPasteTransfer.java
+++ b/
src/jalview/gui/CutAndPasteTransfer.java
@@
-135,6
+135,8
@@
public class CutAndPasteTransfer extends GCutAndPasteTransfer
@Override
public void save_actionPerformed(ActionEvent e)
{
@Override
public void save_actionPerformed(ActionEvent e)
{
+ // TODO: JAL-3048 JalviewFileChooser - Save option
+
JalviewFileChooser chooser = new JalviewFileChooser(
jalview.bin.Cache.getProperty("LAST_DIRECTORY"));
JalviewFileChooser chooser = new JalviewFileChooser(
jalview.bin.Cache.getProperty("LAST_DIRECTORY"));
@@
-272,11
+274,8
@@
public class CutAndPasteTransfer extends GCutAndPasteTransfer
*/
if (viewport != null && viewport.getAlignment() != null)
{
*/
if (viewport != null && viewport.getAlignment() != null)
{
- if (proxyColourScheme != null)
- {
- viewport.applyFeaturesStyle(proxyColourScheme);
- }
((AlignViewport) viewport).addAlignment(al, title);
((AlignViewport) viewport).addAlignment(al, title);
+ viewport.applyFeaturesStyle(proxyColourScheme);
}
else
{
}
else
{
@@
-298,8
+297,9
@@
public class CutAndPasteTransfer extends GCutAndPasteTransfer
AlignFrame.DEFAULT_WIDTH, AlignFrame.DEFAULT_HEIGHT);
af.getViewport().setShowSequenceFeatures(showSeqFeatures);
af.getViewport().setFeaturesDisplayed(fd);
AlignFrame.DEFAULT_WIDTH, AlignFrame.DEFAULT_HEIGHT);
af.getViewport().setShowSequenceFeatures(showSeqFeatures);
af.getViewport().setFeaturesDisplayed(fd);
- ColourSchemeI cs = ColourSchemeMapper
- .getJalviewColourScheme(colourSchemeName, al);
+ af.setMenusForViewport();
+ ColourSchemeI cs = ColourSchemeMapper.getJalviewColourScheme(
+ colourSchemeName, al);
if (cs != null)
{
af.changeColour(cs);
if (cs != null)
{
af.changeColour(cs);
@@
-321,7
+321,7
@@
public class CutAndPasteTransfer extends GCutAndPasteTransfer
af.currentFileFormat = format;
Desktop.addInternalFrame(af, title, AlignFrame.DEFAULT_WIDTH,
AlignFrame.DEFAULT_HEIGHT);
af.currentFileFormat = format;
Desktop.addInternalFrame(af, title, AlignFrame.DEFAULT_WIDTH,
AlignFrame.DEFAULT_HEIGHT);
- af.statusBar.setText(MessageManager
+ af.setStatus(MessageManager
.getString("label.successfully_pasted_alignment_file"));
try
.getString("label.successfully_pasted_alignment_file"));
try