+
+ public void appendText(String text)
+ {
+ textarea.append(text);
+ }
+
+ public void save_actionPerformed(ActionEvent e)
+ {
+ JalviewFileChooser chooser = new JalviewFileChooser(
+ jalview.bin.Cache.getProperty("LAST_DIRECTORY"));
+
+ chooser.setAcceptAllFileFilterUsed(false);
+ chooser.setFileView(new JalviewFileView());
+ chooser.setDialogTitle("Save Text to File");
+ chooser.setToolTipText("Save");
+
+ int value = chooser.showSaveDialog(this);
+
+ if (value == JalviewFileChooser.APPROVE_OPTION)
+ {
+ try
+ {
+ java.io.PrintWriter out = new java.io.PrintWriter(
+ new java.io.FileWriter(chooser.getSelectedFile()));
+
+ out.print(getText());
+ out.close();
+ } catch (Exception ex)
+ {
+ ex.printStackTrace();
+ }
+
+ }
+ }
+
+ /**
+ * DOCUMENT ME!
+ *
+ * @param e
+ * DOCUMENT ME!
+ */
+ public void copyItem_actionPerformed(ActionEvent e)
+ {
+ textarea.getSelectedText();
+ Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard();
+ c.setContents(new StringSelection(textarea.getSelectedText()), null);
+ }
+
+ /**
+ * DOCUMENT ME!
+ *
+ * @param e
+ * DOCUMENT ME!
+ */
+ public void pasteMenu_actionPerformed(ActionEvent e)
+ {
+ Clipboard c = Toolkit.getDefaultToolkit().getSystemClipboard();
+ Transferable contents = c.getContents(this);
+
+ if (contents == null)
+ {
+ return;
+ }
+
+ try
+ {
+ textarea.append((String) contents
+ .getTransferData(DataFlavor.stringFlavor));
+ } catch (Exception ex)
+ {
+ }
+ }
+
+ /**
+ * DOCUMENT ME!
+ *
+ * @param e
+ * DOCUMENT ME!
+ */
+ public void ok_actionPerformed(ActionEvent e)
+ {
+ String format = new IdentifyFile().Identify(getText(), "Paste");
+ // TODO: identify feature, annotation or tree file and parse appropriately.
+ Alignment al = null;
+
+ if (FormatAdapter.isValidFormat(format))
+ {
+ try
+ {
+ al = new FormatAdapter().readFile(getText(), "Paste", format);
+ } catch (java.io.IOException ex)
+ {
+ JOptionPane.showInternalMessageDialog(Desktop.desktop,
+ "Couldn't read the pasted text.\n" + ex.toString(),
+ "Error parsing text", JOptionPane.WARNING_MESSAGE);
+ }
+ }
+
+ if (al != null)
+ {
+ if (viewport != null)
+ {
+ for (int i = 0; i < al.getHeight(); i++)
+ {
+ viewport.getAlignment().addSequence(al.getSequenceAt(i));
+ }
+
+ viewport.firePropertyChange("alignment", null, viewport
+ .getAlignment().getSequences());
+ }
+ else
+ {
+ AlignFrame af = new AlignFrame(al, AlignFrame.DEFAULT_WIDTH,
+ AlignFrame.DEFAULT_HEIGHT);
+ af.currentFileFormat = format;
+ Desktop.addInternalFrame(af, "Cut & Paste input - " + format,
+ AlignFrame.DEFAULT_WIDTH, AlignFrame.DEFAULT_HEIGHT);
+ af.statusBar.setText("Successfully pasted alignment file");
+
+ try
+ {
+ af.setMaximum(jalview.bin.Cache.getDefault("SHOW_FULLSCREEN",
+ false));
+ } catch (Exception ex)
+ {
+ }
+ }
+ }
+ }
+
+ /**
+ * DOCUMENT ME!
+ *
+ * @param e
+ * DOCUMENT ME!
+ */
+ public void cancel_actionPerformed(ActionEvent e)
+ {
+ try
+ {
+ this.setClosed(true);
+ } catch (Exception ex)
+ {
+ }
+ }
+
+ public void textarea_mousePressed(MouseEvent e)
+ {
+ if (SwingUtilities.isRightMouseButton(e))
+ {
+ JPopupMenu popup = new JPopupMenu("Edit");
+ JMenuItem item = new JMenuItem("Copy");
+ item.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ copyItem_actionPerformed(e);
+ }
+ });
+ popup.add(item);
+ item = new JMenuItem("Paste");
+ item.addActionListener(new ActionListener()
+ {
+ public void actionPerformed(ActionEvent e)
+ {
+ pasteMenu_actionPerformed(e);
+ }
+ });
+ popup.add(item);
+ popup.show(this, e.getX() + 10, e.getY() + textarea.getY() + 40);
+
+ }
+ }
+