boolean offscreenRender = false;\r
public Color findFeatureColour(Color initialCol, SequenceI seq, int res)\r
{\r
boolean offscreenRender = false;\r
public Color findFeatureColour(Color initialCol, SequenceI seq, int res)\r
{\r
- * This is used by the Molecule Viewer to get the accurate colour\r
- * of the rendered sequence\r
+ * This is used by the Molecule Viewer and Overview to\r
+ * get the accurate colourof the rendered sequence\r
- lastSequence = av.alignment.getSequenceAt(seqIndex);\r
- lastSequenceIndex = seqIndex;\r
- sequenceFeatures = lastSequence.getDatasetSequence().getSequenceFeatures();\r
+ lastSeq = seq;\r
+ sequenceFeatures = lastSeq.getDatasetSequence().getSequenceFeatures();\r
{\r
offscreenImage.setRGB(0,0,initialCol);\r
drawSequence(offscreenImage.getGraphics(),\r
{\r
offscreenImage.setRGB(0,0,initialCol);\r
drawSequence(offscreenImage.getGraphics(),\r
SequenceFeature [] sequenceFeatures;\r
int sfSize, sfindex, spos, epos;\r
\r
SequenceFeature [] sequenceFeatures;\r
int sfSize, sfindex, spos, epos;\r
\r
sequenceFeatures = seq.getDatasetSequence().getSequenceFeatures();\r
sfSize = sequenceFeatures.length;\r
}\r
sequenceFeatures = seq.getDatasetSequence().getSequenceFeatures();\r
sfSize = sequenceFeatures.length;\r
}\r