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refactor to use model API
[jalview.git]
/
src
/
jalview
/
gui
/
IdPanel.java
diff --git
a/src/jalview/gui/IdPanel.java
b/src/jalview/gui/IdPanel.java
index
11ef52a
..
9d1cae4
100755
(executable)
--- a/
src/jalview/gui/IdPanel.java
+++ b/
src/jalview/gui/IdPanel.java
@@
-85,9
+85,9
@@
public class IdPanel extends JPanel implements MouseListener,
SeqPanel sp = alignPanel.seqPanel;
int seq = Math.max(0, sp.findSeq(e));
String tmp;
SeqPanel sp = alignPanel.seqPanel;
int seq = Math.max(0, sp.findSeq(e));
String tmp;
- if (seq > -1 && seq < av.alignment.getHeight())
+ if (seq > -1 && seq < av.getAlignment().getHeight())
{
{
- SequenceI sequence = av.alignment.getSequenceAt(seq);
+ SequenceI sequence = av.getAlignment().getSequenceAt(seq);
StringBuffer tip = new StringBuffer();
tip.append("<i>");
StringBuffer tip = new StringBuffer();
tip.append("<i>");
@@
-287,7
+287,7
@@
public class IdPanel extends JPanel implements MouseListener,
}
if (mouseDragging && (e.getY() >= getHeight())
}
if (mouseDragging && (e.getY() >= getHeight())
- && (av.alignment.getHeight() > av.getEndSeq()))
+ && (av.getAlignment().getHeight() > av.getEndSeq()))
{
scrollThread = new ScrollThread(false);
}
{
scrollThread = new ScrollThread(false);
}
@@
-342,7
+342,7
@@
public class IdPanel extends JPanel implements MouseListener,
{
av.setSelectionGroup(new SequenceGroup());
av.getSelectionGroup().setStartRes(0);
{
av.setSelectionGroup(new SequenceGroup());
av.getSelectionGroup().setStartRes(0);
- av.getSelectionGroup().setEndRes(av.alignment.getWidth() - 1);
+ av.getSelectionGroup().setEndRes(av.getAlignment().getWidth() - 1);
}
if (e.isShiftDown() && (lastid != -1))
}
if (e.isShiftDown() && (lastid != -1))
@@
-441,7
+441,7
@@
public class IdPanel extends JPanel implements MouseListener,
return;
}
return;
}
- int index = av.alignment.findIndex((SequenceI) found.get(0));
+ int index = av.getAlignment().findIndex((SequenceI) found.get(0));
// do we need to scroll the panel?
if ((av.getStartSeq() > index) || (av.getEndSeq() < index))
// do we need to scroll the panel?
if ((av.getStartSeq() > index) || (av.getEndSeq() < index))