- //LOAD TREES\r
- ///////////////////////////////////////\r
- /* JInternalFrame[] frames = Desktop.desktop.getAllFrames();\r
-for(int t=0; t<frames.length; t++)\r
-{\r
- if (frames[t] instanceof TreePanel)\r
- {\r
- TreePanel tp = (TreePanel) frames[t];\r
- if(tp.treeCanvas.av.alignment==jal)\r
- {\r
- Tree tree = new Tree();\r
- tree.setTitle(tp.getTitle());\r
- tree.setCurrentTree((af.viewport.currentTree == tp.getTree()));\r
- tree.setNewick(tp.getTree().toString());\r
- tree.setThreshold(tp.treeCanvas.threshold);\r
-\r
- tree.setHeight(tp.getHeight());\r
- tree.setWidth(tp.getWidth());\r
- tree.setXpos(tp.getX());\r
- tree.setYpos(tp.getY());\r
-\r
- jms.addTree(tree);\r
- }\r
-*/\r
- if (jms.getTreeCount() > 0)\r
- {\r
- try\r
- {\r
- for(int t = 0; t<jms.getTreeCount(); t++)\r
- {\r
- Tree tree = jms.getTree(t);\r
-\r
- TreePanel tp = af.ShowNewickTree(new jalview.io.NewickFile(\r
- tree.getNewick()), tree.getTitle());\r
-\r
- tp.setBounds( tree.getXpos(),\r
- tree.getYpos(),\r
- tree.getWidth(),\r
- tree.getHeight());\r
-\r
- tp.fitToWindow.setState(tree.getFitToWindow());\r
- tp.fitToWindow_actionPerformed(null);\r
- tp.treeCanvas.fontSize = tree.getFontSize();\r
- tp.fontSize.setText("Font Size - "+tree.getFontSize());\r
- tp.placeholdersMenu.setState(tree.getMarkUnlinked());\r
- tp.placeholdersMenu_actionPerformed(null);\r
- tp.bootstrapMenu.setState(tree.getShowBootstrap());\r
- tp.bootstrapMenu_actionPerformed(null);\r
- tp.distanceMenu.setState(tree.getShowDistances());\r
- tp.distanceMenu_actionPerformed(null);\r
- tp.treeCanvas.threshold = tree.getThreshold();\r
- if(tree.getCurrentTree());\r
- af.viewport.setCurrentTree(tp.getTree());\r