- af.viewport.viewName = view.getViewName();
- af.setBounds(view.getXpos(), view.getYpos(), view.getWidth(),
- view.getHeight());
- af.viewport.setStartRes(view.getStartRes());
- af.viewport.setStartSeq(view.getStartSeq());
- af.viewport.setShowAnnotation(view.getShowAnnotation());
- af.viewport.showConservation = view.getShowConservation();
- af.viewport.showQuality = view.getShowQuality();
- af.viewport.showIdentity = view.getShowIdentity();
- af.viewport.setAbovePIDThreshold(view.getPidSelected());
- af.abovePIDThreshold.setSelected(view.getPidSelected());
- af.viewport.setColourText(view.getShowColourText());
- af.colourTextMenuItem.setSelected(view.getShowColourText());
- af.viewport.setConservationSelected(view.getConservationSelected());
- af.conservationMenuItem.setSelected(view.getConservationSelected());
-
- af.viewport.setShowJVSuffix(view.getShowFullId());
- af.seqLimits.setSelected(view.getShowFullId());
-
- af.viewport.setFont(new java.awt.Font(view.getFontName(),
- view.getFontStyle(), view.getFontSize()));
- af.alignPanel.fontChanged();
-
- af.viewport.setRenderGaps(view.getRenderGaps());
- af.renderGapsMenuItem.setSelected(view.getRenderGaps());
-
- af.viewport.setWrapAlignment(view.getWrapAlignment());
- af.wrapMenuItem.setSelected(view.getWrapAlignment());
-
- af.alignPanel.setWrapAlignment(view.getWrapAlignment());
-
- af.annotationPanelMenuItem.setState(view.getShowAnnotation());
- af.viewport.setShowAnnotation(view.getShowAnnotation());
- af.alignPanel.setAnnotationVisible(view.getShowAnnotation());
-
- af.viewport.setShowBoxes(view.getShowBoxes());
- af.viewBoxesMenuItem.setSelected(view.getShowBoxes());
- af.viewport.setShowText(view.getShowText());
- af.viewTextMenuItem.setSelected(view.getShowText());