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JAL-2446 FeatureStore with NCList - work in progress
[jalview.git]
/
src
/
jalview
/
gui
/
OverviewPanel.java
diff --git
a/src/jalview/gui/OverviewPanel.java
b/src/jalview/gui/OverviewPanel.java
index
9be4fdb
..
36a4575
100755
(executable)
--- a/
src/jalview/gui/OverviewPanel.java
+++ b/
src/jalview/gui/OverviewPanel.java
@@
-295,6
+295,9
@@
public class OverviewPanel extends JPanel implements Runnable
final boolean hasHiddenRows = av.hasHiddenRows(), hasHiddenCols = av
.hasHiddenColumns();
boolean hiddenRow = false;
final boolean hasHiddenRows = av.hasHiddenRows(), hasHiddenCols = av
.hasHiddenColumns();
boolean hiddenRow = false;
+ // get hidden row and hidden column map once at beginning.
+ // clone featureRenderer settings to avoid race conditions... if state is
+ // updated just need to refresh again
for (row = 0; row < sequencesHeight; row++)
{
if (resizeAgain)
for (row = 0; row < sequencesHeight; row++)
{
if (resizeAgain)
@@
-346,6
+349,7
@@
public class OverviewPanel extends JPanel implements Runnable
continue;
}
continue;
}
+ // long start = System.currentTimeMillis();
for (col = 0; col < width; col++)
{
if (resizeAgain)
for (col = 0; col < width; col++)
{
if (resizeAgain)
@@
-385,6
+389,8
@@
public class OverviewPanel extends JPanel implements Runnable
miniMe.setRGB(col, row, color);
}
miniMe.setRGB(col, row, color);
}
+ // System.out.println(String.format("Row %d with width %d took %dms",
+ // row, width, System.currentTimeMillis() - start));
}
if (av.getAlignmentConservationAnnotation() != null)
}
if (av.getAlignmentConservationAnnotation() != null)
@@
-411,13
+417,17
@@
public class OverviewPanel extends JPanel implements Runnable
resizing = false;
resizing = false;
- setBoxPosition();
-
if (resizeAgain)
{
resizeAgain = false;
updateOverviewImage();
}
if (resizeAgain)
{
resizeAgain = false;
updateOverviewImage();
}
+ else
+ {
+ lastMiniMe = miniMe;
+ }
+
+ setBoxPosition();
}
/**
}
/**
@@
-472,6
+482,8
@@
public class OverviewPanel extends JPanel implements Runnable
repaint();
}
repaint();
}
+ private BufferedImage lastMiniMe = null;
+
/**
* DOCUMENT ME!
*
/**
* DOCUMENT ME!
*
@@
-481,19
+493,32
@@
public class OverviewPanel extends JPanel implements Runnable
@Override
public void paintComponent(Graphics g)
{
@Override
public void paintComponent(Graphics g)
{
- if (resizing)
+ if (resizing || resizeAgain)
{
{
- g.setColor(Color.white);
+ if (lastMiniMe == null)
+ {
+ g.setColor(Color.white);
+ g.fillRect(0, 0, getWidth(), getHeight());
+ }
+ else
+ {
+ g.drawImage(lastMiniMe, 0, 0, getWidth(), getHeight(), this);
+ }
+ g.setColor(new Color(100, 100, 100, 25));
g.fillRect(0, 0, getWidth(), getHeight());
}
g.fillRect(0, 0, getWidth(), getHeight());
}
- else if (miniMe != null)
+ else if (lastMiniMe != null)
{
{
- g.drawImage(miniMe, 0, 0, this);
+ g.drawImage(lastMiniMe, 0, 0, this);
+ if (lastMiniMe != miniMe)
+ {
+ g.setColor(new Color(100, 100, 100, 25));
+ g.fillRect(0, 0, getWidth(), getHeight());
+ }
}
}
-
+ // TODO: render selected regions
g.setColor(Color.red);
g.drawRect(boxX, boxY, boxWidth, boxHeight);
g.drawRect(boxX + 1, boxY + 1, boxWidth - 2, boxHeight - 2);
g.setColor(Color.red);
g.drawRect(boxX, boxY, boxWidth, boxHeight);
g.drawRect(boxX + 1, boxY + 1, boxWidth - 2, boxHeight - 2);
-
}
}
}
}