+ public PCAPanel(AlignmentPanel alignPanel)
+ {
+ this(alignPanel, ScoreModels.getInstance().getDefaultModel(
+ !alignPanel.av.getAlignment().isNucleotide()),
+ SimilarityParams.SeqSpace);
+ }
+
+ /**
+ * Constructor given sequence data, a similarity (or distance) score model,
+ * and score calculation parameters
+ *
+ * @param alignPanel
+ * @param scoreModel
+ * @param params
+ */
+ public PCAPanel(AlignmentPanel alignPanel, ScoreModelI scoreModel,
+ SimilarityParamsI params)