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set gap char modified
[jalview.git]
/
src
/
jalview
/
gui
/
PCAPanel.java
diff --git
a/src/jalview/gui/PCAPanel.java
b/src/jalview/gui/PCAPanel.java
index
97df517
..
8e0bc37
100755
(executable)
--- a/
src/jalview/gui/PCAPanel.java
+++ b/
src/jalview/gui/PCAPanel.java
@@
-23,6
+23,14
@@
public class PCAPanel extends GPCAPanel implements Runnable
public PCAPanel(AlignViewport av, SequenceI[] s) {
\r
\r
this.av = av;
\r
public PCAPanel(AlignViewport av, SequenceI[] s) {
\r
\r
this.av = av;
\r
+ if(av.getSelectionGroup().getSize()>3)
\r
+ {
\r
+ s = new Sequence[av.getSelectionGroup().getSize()];
\r
+ for(int i=0; i<s.length; i++)
\r
+ s[i] = av.getSelectionGroup().getSequenceAt(i);
\r
+ }
\r
+
\r
+
\r
if(s==null)
\r
{
\r
s = new Sequence[av.getAlignment().getHeight()];
\r
if(s==null)
\r
{
\r
s = new Sequence[av.getAlignment().getHeight()];
\r
@@
-62,10
+70,12
@@
public class PCAPanel extends GPCAPanel implements Runnable
Vector points = new Vector();
\r
float[][] scores = pca.getComponents(top-1,top-2,top-3,100);
\r
\r
Vector points = new Vector();
\r
float[][] scores = pca.getComponents(top-1,top-2,top-3,100);
\r
\r
- for (int i =0; i < pca.getM().rows; i++ ) {
\r
+ for (int i =0; i < pca.getM().rows; i++ )
\r
+ {
\r
SequencePoint sp = new SequencePoint(s[i],scores[i]);
\r
points.addElement(sp);
\r
}
\r
SequencePoint sp = new SequencePoint(s[i],scores[i]);
\r
points.addElement(sp);
\r
}
\r
+
\r
rc = new RotatableCanvas(av,points,pca.getM().rows);
\r
\r
//rc.printPoints();
\r
rc = new RotatableCanvas(av,points,pca.getM().rows);
\r
\r
//rc.printPoints();
\r