git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
JAL-1402 conditional logic to ensure annotation & label panel/canvas components not...
[jalview.git]
/
src
/
jalview
/
gui
/
PCAPanel.java
diff --git
a/src/jalview/gui/PCAPanel.java
b/src/jalview/gui/PCAPanel.java
index
38fd74d
..
d1216b9
100644
(file)
--- a/
src/jalview/gui/PCAPanel.java
+++ b/
src/jalview/gui/PCAPanel.java
@@
-1,5
+1,5
@@
/*
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
* Copyright (C) 2014 The Jalview Authors
*
* This file is part of Jalview.
@@
-28,7
+28,6
@@
import javax.swing.*;
import jalview.datamodel.*;
import jalview.jbgui.*;
import jalview.schemes.ResidueProperties;
import jalview.datamodel.*;
import jalview.jbgui.*;
import jalview.schemes.ResidueProperties;
-import jalview.schemes.ScoreMatrix;
import jalview.util.MessageManager;
import jalview.viewmodel.PCAModel;
import jalview.util.MessageManager;
import jalview.viewmodel.PCAModel;
@@
-206,6
+205,7
@@
public class PCAPanel extends GPCAPanel implements Runnable,
if (!pcaModel.isNucleotide())
{
pcaModel.setNucleotide(true);
if (!pcaModel.isNucleotide())
{
pcaModel.setNucleotide(true);
+ pcaModel.setScore_matrix("DNA");
Thread worker = new Thread(this);
worker.start();
}
Thread worker = new Thread(this);
worker.start();
}
@@
-219,6
+219,7
@@
public class PCAPanel extends GPCAPanel implements Runnable,
if (pcaModel.isNucleotide())
{
pcaModel.setNucleotide(false);
if (pcaModel.isNucleotide())
{
pcaModel.setNucleotide(false);
+ pcaModel.setScore_matrix("BLOSUM62");
Thread worker = new Thread(this);
worker.start();
}
Thread worker = new Thread(this);
worker.start();
}