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Merge branch 'develop' into features/JAL-2446NCList
[jalview.git]
/
src
/
jalview
/
gui
/
PCAPanel.java
diff --git
a/src/jalview/gui/PCAPanel.java
b/src/jalview/gui/PCAPanel.java
index
e9ba1e7
..
d8e6b06
100644
(file)
--- a/
src/jalview/gui/PCAPanel.java
+++ b/
src/jalview/gui/PCAPanel.java
@@
-27,7
+27,7
@@
import jalview.api.analysis.SimilarityParamsI;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.AlignmentView;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.AlignmentView;
-import jalview.datamodel.ColumnSelection;
+import jalview.datamodel.HiddenColumns;
import jalview.datamodel.SequenceI;
import jalview.jbgui.GPCAPanel;
import jalview.util.MessageManager;
import jalview.datamodel.SequenceI;
import jalview.jbgui.GPCAPanel;
import jalview.util.MessageManager;
@@
-406,7
+406,7
@@
public class PCAPanel extends GPCAPanel implements Runnable,
}
;
Object[] alAndColsel = pcaModel.getSeqtrings()
}
;
Object[] alAndColsel = pcaModel.getSeqtrings()
- .getAlignmentAndColumnSelection(gc);
+ .getAlignmentAndHiddenColumns(gc);
if (alAndColsel != null && alAndColsel[0] != null)
{
if (alAndColsel != null && alAndColsel[0] != null)
{
@@
-423,8
+423,8
@@
public class PCAPanel extends GPCAPanel implements Runnable,
if (true)
{
// make a new frame!
if (true)
{
// make a new frame!
- AlignFrame af = new AlignFrame(al,
- (ColumnSelection) alAndColsel[1], AlignFrame.DEFAULT_WIDTH,
+ AlignFrame af = new AlignFrame(al, (HiddenColumns) alAndColsel[1],
+ AlignFrame.DEFAULT_WIDTH,
AlignFrame.DEFAULT_HEIGHT);
// >>>This is a fix for the moment, until a better solution is
AlignFrame.DEFAULT_HEIGHT);
// >>>This is a fix for the moment, until a better solution is