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JAL-360 JAL-3975 update parent for text colour dialog - doesn't seem to help but...
[jalview.git]
/
src
/
jalview
/
gui
/
PCAPanel.java
diff --git
a/src/jalview/gui/PCAPanel.java
b/src/jalview/gui/PCAPanel.java
index
6c76c3e
..
e6b6b83
100644
(file)
--- a/
src/jalview/gui/PCAPanel.java
+++ b/
src/jalview/gui/PCAPanel.java
@@
-24,7
+24,7
@@
import jalview.analysis.scoremodels.ScoreModels;
import jalview.api.AlignViewportI;
import jalview.api.analysis.ScoreModelI;
import jalview.api.analysis.SimilarityParamsI;
import jalview.api.AlignViewportI;
import jalview.api.analysis.ScoreModelI;
import jalview.api.analysis.SimilarityParamsI;
-import jalview.bin.Cache;
+import jalview.bin.Console;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.AlignmentView;
import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentI;
import jalview.datamodel.AlignmentView;
@@
-122,8
+122,8
@@
public class PCAPanel extends GPCAPanel
ScoreModelI scoreModel = ScoreModels.getInstance()
.getScoreModel(modelName, ap);
ScoreModelI scoreModel = ScoreModels.getInstance()
.getScoreModel(modelName, ap);
- setPcaModel(new PCAModel(seqstrings, seqs, nucleotide, scoreModel,
- params));
+ setPcaModel(
+ new PCAModel(seqstrings, seqs, nucleotide, scoreModel, params));
PaintRefresher.Register(this, av.getSequenceSetId());
setRotatableCanvas(new RotatableCanvas(alignPanel));
PaintRefresher.Register(this, av.getSequenceSetId());
setRotatableCanvas(new RotatableCanvas(alignPanel));
@@
-297,7
+297,7
@@
public class PCAPanel extends GPCAPanel
// JAL-2647 disabled after load from project (until save to project done)
if (getPcaModel().getInputData() == null)
{
// JAL-2647 disabled after load from project (until save to project done)
if (getPcaModel().getInputData() == null)
{
- Cache.log.info(
+ Console.info(
"Unexpected call to originalSeqData_actionPerformed - should have hidden this menu action.");
return;
}
"Unexpected call to originalSeqData_actionPerformed - should have hidden this menu action.");
return;
}
@@
-426,9
+426,9
@@
public class PCAPanel extends GPCAPanel
@Override
public void exportImage(Graphics g) throws Exception
{
@Override
public void exportImage(Graphics g) throws Exception
{
- RotatableCanvas canvas = getRotatableCanvas();
- canvas.drawBackground(g);
- canvas.drawScene(g);
+ RotatableCanvas canvas = getRotatableCanvas();
+ canvas.drawBackground(g);
+ canvas.drawScene(g);
if (canvas.drawAxes)
{
canvas.drawAxes(g);
if (canvas.drawAxes)
{
canvas.drawAxes(g);
@@
-621,7
+621,8
@@
public class PCAPanel extends GPCAPanel
final IProgressIndicatorHandler handler)
{
progressBar.registerHandler(id, handler);
final IProgressIndicatorHandler handler)
{
progressBar.registerHandler(id, handler);
- // if (progressBarHandlers == null || !progressBars.contains(Long.valueOf(id)))
+ // if (progressBarHandlers == null ||
+ // !progressBars.contains(Long.valueOf(id)))
// {
// throw new
// Error(MessageManager.getString("error.call_setprogressbar_before_registering_handler"));
// {
// throw new
// Error(MessageManager.getString("error.call_setprogressbar_before_registering_handler"));