- /*
- * switch to the chosen colour scheme (or null for None)
- */
- ColourSchemeI colourScheme = ColourSchemes.getInstance().getColourScheme(
- colourSchemeName, sg, ap.av.getHiddenRepSequences());
- sg.setColourScheme(colourScheme);
- if (colourScheme instanceof Blosum62ColourScheme
- || colourScheme instanceof PIDColourScheme)
- {
- sg.cs.setConsensus(AAFrequency.calculate(
- sg.getSequences(ap.av.getHiddenRepSequences()),
- sg.getStartRes(), sg.getEndRes() + 1));
- }
+ sg.cs.setConsensus(AAFrequency.calculate(
+ sg.getSequences(ap.av.getHiddenRepSequences()),
+ sg.getStartRes(), sg.getEndRes() + 1));