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JAL-842; Implement transmitting of Jalview Sequence highlights to
[jalview.git]
/
src
/
jalview
/
gui
/
PopupMenu.java
diff --git
a/src/jalview/gui/PopupMenu.java
b/src/jalview/gui/PopupMenu.java
index
2ac304b
..
82ce835
100644
(file)
--- a/
src/jalview/gui/PopupMenu.java
+++ b/
src/jalview/gui/PopupMenu.java
@@
-269,6
+269,8
@@
public class PopupMenu extends JPopupMenu
break;
}
}
break;
}
}
+
+ SequenceGroup a = aa[0].groupRef;
//TODO: make rnastrucF a bit more nice
final String rnastrucF=rnastruc;
//TODO: make rnastrucF a bit more nice
final String rnastrucF=rnastruc;
@@
-280,7
+282,7
@@
public class PopupMenu extends JPopupMenu
{
System.out.println("Call Varna "+seq.getSequenceAsString()+" "+seq.getName());
//TODO: VARNA does'nt print gaps in the sequence
{
System.out.println("Call Varna "+seq.getSequenceAsString()+" "+seq.getName());
//TODO: VARNA does'nt print gaps in the sequence
- new AppVarna(seq.getSequenceAsString(),rnastrucF,seq.getName());
+ new AppVarna(seq.getSequenceAsString(),rnastrucF,seq.getName(),ap);
}
});
viewStructureMenu.add(menuItem);
}
});
viewStructureMenu.add(menuItem);