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JAL-2773 add new flag to paintAlignment(updateOverview,updateStructures) and first...
[jalview.git]
/
src
/
jalview
/
gui
/
PopupMenu.java
diff --git
a/src/jalview/gui/PopupMenu.java
b/src/jalview/gui/PopupMenu.java
index
2ef71cc
..
850a09a
100644
(file)
--- a/
src/jalview/gui/PopupMenu.java
+++ b/
src/jalview/gui/PopupMenu.java
@@
-1743,7
+1743,7
@@
public class PopupMenu extends JPopupMenu implements ColourChangeListener
}
sequence.setName(dialog.getName().replace(' ', '_'));
}
sequence.setName(dialog.getName().replace(' ', '_'));
- ap.paintAlignment(false);
+ ap.paintAlignment(false, false);
}
sequence.setDescription(dialog.getDescription());
}
sequence.setDescription(dialog.getDescription());
@@
-1946,8
+1946,7
@@
public class PopupMenu extends JPopupMenu implements ColourChangeListener
if (start <= end)
{
seqs.add(sg.getSequenceAt(i).getDatasetSequence());
if (start <= end)
{
seqs.add(sg.getSequenceAt(i).getDatasetSequence());
- features.add(
- new SequenceFeature(null, null, null, start, end, null));
+ features.add(new SequenceFeature(null, null, start, end, null));
}
}
}
}
@@
-1960,7
+1959,8
@@
public class PopupMenu extends JPopupMenu implements ColourChangeListener
.amendFeatures(seqs, features, true, ap))
{
ap.alignFrame.setShowSeqFeatures(true);
.amendFeatures(seqs, features, true, ap))
{
ap.alignFrame.setShowSeqFeatures(true);
- ap.highlightSearchResults(null);
+ ap.av.setSearchResults(null); // clear highlighting
+ ap.repaint(); // draw new/amended features
}
}
}
}
}
}