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JAL-4290 new CommandsTest.headlessOrGuiImageOutputTest - uses CommandLineOperations...
[jalview.git]
/
src
/
jalview
/
gui
/
PopupMenu.java
diff --git
a/src/jalview/gui/PopupMenu.java
b/src/jalview/gui/PopupMenu.java
index
57a2fa0
..
8875288
100644
(file)
--- a/
src/jalview/gui/PopupMenu.java
+++ b/
src/jalview/gui/PopupMenu.java
@@
-1735,10
+1735,8
@@
public class PopupMenu extends JPopupMenu implements ColourChangeListener
protected void addReferenceAnnotations_actionPerformed(
Map<SequenceI, List<AlignmentAnnotation>> candidates)
{
protected void addReferenceAnnotations_actionPerformed(
Map<SequenceI, List<AlignmentAnnotation>> candidates)
{
- final SequenceGroup selectionGroup = this.ap.av.getSelectionGroup();
final AlignmentI alignment = this.ap.getAlignment();
final AlignmentI alignment = this.ap.getAlignment();
- AlignmentUtils.addReferenceAnnotations(candidates, alignment,
- selectionGroup);
+ AlignmentUtils.addReferenceAnnotations(candidates, alignment, null);
refresh();
}
refresh();
}
@@
-2192,7
+2190,8
@@
public class PopupMenu extends JPopupMenu implements ColourChangeListener
String[] omitHidden = null;
String[] omitHidden = null;
- System.out.println("PROMPT USER HERE"); // TODO: decide if a prompt happens
+ jalview.bin.Console.outPrintln("PROMPT USER HERE"); // TODO: decide if a
+ // prompt happens
// or we simply trust the user wants
// wysiwig behaviour
// or we simply trust the user wants
// wysiwig behaviour