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JAL-1499 MEGA format, JAL-1421 List<String> url links
[jalview.git]
/
src
/
jalview
/
gui
/
PopupMenu.java
diff --git
a/src/jalview/gui/PopupMenu.java
b/src/jalview/gui/PopupMenu.java
index
5699d9e
..
8953487
100644
(file)
--- a/
src/jalview/gui/PopupMenu.java
+++ b/
src/jalview/gui/PopupMenu.java
@@
-33,7
+33,6
@@
import jalview.datamodel.Annotation;
import jalview.datamodel.ColumnSelection;
import jalview.datamodel.DBRefEntry;
import jalview.datamodel.PDBEntry;
import jalview.datamodel.ColumnSelection;
import jalview.datamodel.DBRefEntry;
import jalview.datamodel.PDBEntry;
-import jalview.datamodel.Sequence;
import jalview.datamodel.SequenceFeature;
import jalview.datamodel.SequenceGroup;
import jalview.datamodel.SequenceI;
import jalview.datamodel.SequenceFeature;
import jalview.datamodel.SequenceGroup;
import jalview.datamodel.SequenceI;
@@
-62,6
+61,7
@@
import jalview.util.UrlLink;
import java.awt.Color;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
import java.awt.Color;
import java.awt.event.ActionEvent;
import java.awt.event.ActionListener;
+import java.util.ArrayList;
import java.util.Arrays;
import java.util.Collections;
import java.util.Hashtable;
import java.util.Arrays;
import java.util.Collections;
import java.util.Hashtable;
@@
-137,7
+137,7
@@
public class PopupMenu extends JPopupMenu
JMenuItem sequenceDetails = new JMenuItem();
JMenuItem sequenceSelDetails = new JMenuItem();
JMenuItem sequenceDetails = new JMenuItem();
JMenuItem sequenceSelDetails = new JMenuItem();
-
+
JMenuItem makeReferenceSeq = new JMenuItem();
JMenuItem chooseAnnotations = new JMenuItem();
JMenuItem makeReferenceSeq = new JMenuItem();
JMenuItem chooseAnnotations = new JMenuItem();
@@
-215,19
+215,6
@@
public class PopupMenu extends JPopupMenu
JMenuItem hideInsertions = new JMenuItem();
/**
JMenuItem hideInsertions = new JMenuItem();
/**
- * Creates a new PopupMenu object.
- *
- * @param ap
- * DOCUMENT ME!
- * @param seq
- * DOCUMENT ME!
- */
- public PopupMenu(final AlignmentPanel ap, Sequence seq, Vector links)
- {
- this(ap, seq, links, null);
- }
-
- /**
*
* @param ap
* @param seq
*
* @param ap
* @param seq
@@
-235,7
+222,7
@@
public class PopupMenu extends JPopupMenu
* @param groupLinks
*/
public PopupMenu(final AlignmentPanel ap, final SequenceI seq,
* @param groupLinks
*/
public PopupMenu(final AlignmentPanel ap, final SequenceI seq,
- Vector links, Vector groupLinks)
+ List<String> links, List<String> groupLinks)
{
// /////////////////////////////////////////////////////////
// If this is activated from the sequence panel, the user may want to
{
// /////////////////////////////////////////////////////////
// If this is activated from the sequence panel, the user may want to
@@
-317,9
+304,13
@@
public class PopupMenu extends JPopupMenu
sequenceMenu.setText(sequence.getName());
if (seq == ap.av.getAlignment().getSeqrep())
{
sequenceMenu.setText(sequence.getName());
if (seq == ap.av.getAlignment().getSeqrep())
{
- makeReferenceSeq.setText("Unmark representative");
- } else {
- makeReferenceSeq.setText("Mark as representative");
+ makeReferenceSeq.setText(MessageManager
+ .getString("action.unmark_as_reference"));
+ }
+ else
+ {
+ makeReferenceSeq.setText(MessageManager
+ .getString("action.set_as_reference"));
}
if (!ap.av.getAlignment().isNucleotide())
}
if (!ap.av.getAlignment().isNucleotide())
@@
-346,8
+337,8
@@
public class PopupMenu extends JPopupMenu
*/
menuItem = new JMenuItem();
menuItem.setText(MessageManager.formatMessage(
*/
menuItem = new JMenuItem();
menuItem.setText(MessageManager.formatMessage(
- "label.2d_rna_structure_line", new Object[]
- { aa.label }));
+ "label.2d_rna_structure_line",
+ new Object[] { aa.label }));
menuItem.addActionListener(new java.awt.event.ActionListener()
{
@Override
menuItem.addActionListener(new java.awt.event.ActionListener()
{
@Override
@@
-374,8
+365,8
@@
public class PopupMenu extends JPopupMenu
// TODO: make rnastrucF a bit more nice
menuItem = new JMenuItem();
menuItem.setText(MessageManager.formatMessage(
// TODO: make rnastrucF a bit more nice
menuItem = new JMenuItem();
menuItem.setText(MessageManager.formatMessage(
- "label.2d_rna_sequence_name", new Object[]
- { seq.getName() }));
+ "label.2d_rna_sequence_name",
+ new Object[] { seq.getName() }));
menuItem.addActionListener(new java.awt.event.ActionListener()
{
@Override
menuItem.addActionListener(new java.awt.event.ActionListener()
{
@Override
@@
-411,8
+402,8
@@
public class PopupMenu extends JPopupMenu
&& ap.av.getSelectionGroup().getSize() > 1)
{
menuItem = new JMenuItem(MessageManager.formatMessage(
&& ap.av.getSelectionGroup().getSize() > 1)
{
menuItem = new JMenuItem(MessageManager.formatMessage(
- "label.represent_group_with", new Object[]
- { seq.getName() }));
+ "label.represent_group_with",
+ new Object[] { seq.getName() }));
menuItem.addActionListener(new java.awt.event.ActionListener()
{
@Override
menuItem.addActionListener(new java.awt.event.ActionListener()
{
@Override
@@
-480,8
+471,7
@@
public class PopupMenu extends JPopupMenu
if (sg != null && sg.getSize() > 0)
{
groupName.setText(MessageManager.formatMessage("label.name_param",
if (sg != null && sg.getSize() > 0)
{
groupName.setText(MessageManager.formatMessage("label.name_param",
- new Object[]
- { sg.getName() }));
+ new Object[] { sg.getName() }));
groupName.setText(MessageManager
.getString("label.edit_name_and_description_current_group"));
groupName.setText(MessageManager
.getString("label.edit_name_and_description_current_group"));
@@
-561,7
+551,7
@@
public class PopupMenu extends JPopupMenu
SequenceI sqass = null;
for (SequenceI sq : ap.av.getSequenceSelection())
{
SequenceI sqass = null;
for (SequenceI sq : ap.av.getSequenceSelection())
{
- Vector<PDBEntry> pes = sq.getDatasetSequence().getPDBId();
+ Vector<PDBEntry> pes = sq.getDatasetSequence().getAllPDBEntries();
if (pes != null && pes.size() > 0)
{
reppdb.put(pes.get(0).getId(), pes.get(0));
if (pes != null && pes.size() > 0)
{
reppdb.put(pes.get(0).getId(), pes.get(0));
@@
-613,10
+603,10
@@
public class PopupMenu extends JPopupMenu
{
JMenu linkMenu = new JMenu(MessageManager.getString("action.link"));
{
JMenu linkMenu = new JMenu(MessageManager.getString("action.link"));
- Vector linkset = new Vector();
+ List<String> linkset = new ArrayList<String>();
for (int i = 0; i < links.size(); i++)
{
for (int i = 0; i < links.size(); i++)
{
- String link = links.elementAt(i).toString();
+ String link = links.get(i);
UrlLink urlLink = null;
try
{
UrlLink urlLink = null;
try
{
@@
-639,8
+629,7
@@
public class PopupMenu extends JPopupMenu
// collect matching db-refs
DBRefEntry[] dbr = jalview.util.DBRefUtils.selectRefs(
// collect matching db-refs
DBRefEntry[] dbr = jalview.util.DBRefUtils.selectRefs(
- seq.getDBRef(), new String[]
- { urlLink.getTarget() });
+ seq.getDBRef(), new String[] { urlLink.getTarget() });
// collect id string too
String id = seq.getName();
String descr = seq.getDescription();
// collect id string too
String id = seq.getName();
String descr = seq.getDescription();
@@
-668,7
+657,7
@@
public class PopupMenu extends JPopupMenu
{
if (!linkset.contains(urls[u] + "|" + urls[u + 1]))
{
{
if (!linkset.contains(urls[u] + "|" + urls[u + 1]))
{
- linkset.addElement(urls[u] + "|" + urls[u + 1]);
+ linkset.add(urls[u] + "|" + urls[u + 1]);
addshowLink(linkMenu, label + "|" + urls[u],
urls[u + 1]);
}
addshowLink(linkMenu, label + "|" + urls[u],
urls[u + 1]);
}
@@
-686,7
+675,7
@@
public class PopupMenu extends JPopupMenu
{
if (!linkset.contains(urls[u] + "|" + urls[u + 1]))
{
{
if (!linkset.contains(urls[u] + "|" + urls[u + 1]))
{
- linkset.addElement(urls[u] + "|" + urls[u + 1]);
+ linkset.add(urls[u] + "|" + urls[u + 1]);
addshowLink(linkMenu, label, urls[u + 1]);
}
}
addshowLink(linkMenu, label, urls[u + 1]);
}
}
@@
-704,7
+693,7
@@
public class PopupMenu extends JPopupMenu
{
if (!linkset.contains(urls[u] + "|" + urls[u + 1]))
{
{
if (!linkset.contains(urls[u] + "|" + urls[u + 1]))
{
- linkset.addElement(urls[u] + "|" + urls[u + 1]);
+ linkset.add(urls[u] + "|" + urls[u + 1]);
addshowLink(linkMenu, label, urls[u + 1]);
}
}
addshowLink(linkMenu, label, urls[u + 1]);
}
}
@@
-715,7
+704,7
@@
public class PopupMenu extends JPopupMenu
{
if (!linkset.contains(label + "|" + urlLink.getUrl_prefix()))
{
{
if (!linkset.contains(label + "|" + urlLink.getUrl_prefix()))
{
- linkset.addElement(label + "|" + urlLink.getUrl_prefix());
+ linkset.add(label + "|" + urlLink.getUrl_prefix());
// Add a non-dynamic link
addshowLink(linkMenu, label, urlLink.getUrl_prefix());
}
// Add a non-dynamic link
addshowLink(linkMenu, label, urlLink.getUrl_prefix());
}
@@
-771,17
+760,15
@@
public class PopupMenu extends JPopupMenu
*/
Map<String, List<List<String>>> shownTypes = new LinkedHashMap<String, List<List<String>>>();
Map<String, List<List<String>>> hiddenTypes = new LinkedHashMap<String, List<List<String>>>();
*/
Map<String, List<List<String>>> shownTypes = new LinkedHashMap<String, List<List<String>>>();
Map<String, List<List<String>>> hiddenTypes = new LinkedHashMap<String, List<List<String>>>();
- AlignmentAnnotationUtils.getShownHiddenTypes(shownTypes,
- hiddenTypes,
- AlignmentAnnotationUtils.asList(annotations),
- forSequences);
+ AlignmentAnnotationUtils.getShownHiddenTypes(shownTypes, hiddenTypes,
+ AlignmentAnnotationUtils.asList(annotations), forSequences);
for (String calcId : hiddenTypes.keySet())
{
for (List<String> type : hiddenTypes.get(calcId))
{
for (String calcId : hiddenTypes.keySet())
{
for (List<String> type : hiddenTypes.get(calcId))
{
- addAnnotationTypeToShowHide(showMenu, forSequences,
- calcId, type, false, true);
+ addAnnotationTypeToShowHide(showMenu, forSequences, calcId, type,
+ false, true);
}
}
// grey out 'show annotations' if none are hidden
}
}
// grey out 'show annotations' if none are hidden
@@
-791,8
+778,8
@@
public class PopupMenu extends JPopupMenu
{
for (List<String> type : shownTypes.get(calcId))
{
{
for (List<String> type : shownTypes.get(calcId))
{
- addAnnotationTypeToShowHide(hideMenu, forSequences,
- calcId, type, false, false);
+ addAnnotationTypeToShowHide(hideMenu, forSequences, calcId, type,
+ false, false);
}
}
// grey out 'hide annotations' if none are shown
}
}
// grey out 'hide annotations' if none are shown
@@
-853,15
+840,15
@@
public class PopupMenu extends JPopupMenu
@Override
public void actionPerformed(ActionEvent e)
{
@Override
public void actionPerformed(ActionEvent e)
{
- AlignmentUtils.showOrHideSequenceAnnotations(ap.getAlignment(), types,
- forSequences, allTypes, actionIsShow);
+ AlignmentUtils.showOrHideSequenceAnnotations(ap.getAlignment(),
+ types, forSequences, allTypes, actionIsShow);
refresh();
}
});
showOrHideMenu.add(item);
}
refresh();
}
});
showOrHideMenu.add(item);
}
- private void buildGroupURLMenu(SequenceGroup sg, Vector groupLinks)
+ private void buildGroupURLMenu(SequenceGroup sg, List<String> groupLinks)
{
// TODO: usability: thread off the generation of group url content so root
{
// TODO: usability: thread off the generation of group url content so root
@@
-870,8
+857,8
@@
public class PopupMenu extends JPopupMenu
// ID/regex match URLs
groupLinksMenu = new JMenu(
MessageManager.getString("action.group_link"));
// ID/regex match URLs
groupLinksMenu = new JMenu(
MessageManager.getString("action.group_link"));
- JMenu[] linkMenus = new JMenu[]
- { null, new JMenu(MessageManager.getString("action.ids")),
+ JMenu[] linkMenus = new JMenu[] { null,
+ new JMenu(MessageManager.getString("action.ids")),
new JMenu(MessageManager.getString("action.sequences")),
new JMenu(MessageManager.getString("action.ids_sequences")) }; // three
// types
new JMenu(MessageManager.getString("action.sequences")),
new JMenu(MessageManager.getString("action.ids_sequences")) }; // three
// types
@@
-906,8
+893,7
@@
public class PopupMenu extends JPopupMenu
if (sarray == null)
{
sarray = new Object[2];
if (sarray == null)
{
sarray = new Object[2];
- sarray[0] = new int[]
- { 0 };
+ sarray[0] = new int[] { 0 };
sarray[1] = new String[seqs.length];
commonDbrefs.put(src, sarray);
sarray[1] = new String[seqs.length];
commonDbrefs.put(src, sarray);
@@
-930,7
+916,7
@@
public class PopupMenu extends JPopupMenu
// to user
for (int i = 0; i < groupLinks.size(); i++)
{
// to user
for (int i = 0; i < groupLinks.size(); i++)
{
- String link = groupLinks.elementAt(i).toString();
+ String link = groupLinks.get(i);
GroupUrlLink urlLink = null;
try
{
GroupUrlLink urlLink = null;
try
{
@@
-1027,8
+1013,7
@@
public class PopupMenu extends JPopupMenu
{
JMenuItem item = new JMenuItem(label);
item.setToolTipText(MessageManager.formatMessage(
{
JMenuItem item = new JMenuItem(label);
item.setToolTipText(MessageManager.formatMessage(
- "label.open_url_param", new Object[]
- { url }));
+ "label.open_url_param", new Object[] { url }));
item.addActionListener(new java.awt.event.ActionListener()
{
@Override
item.addActionListener(new java.awt.event.ActionListener()
{
@Override
@@
-1067,8
+1052,7
@@
public class PopupMenu extends JPopupMenu
JMenuItem item = new JMenuItem(label);
item.setToolTipText(MessageManager.formatMessage(
"label.open_url_seqs_param",
JMenuItem item = new JMenuItem(label);
item.setToolTipText(MessageManager.formatMessage(
"label.open_url_seqs_param",
- new Object[]
- { urlgenerator.getUrl_prefix(),
+ new Object[] { urlgenerator.getUrl_prefix(),
urlgenerator.getNumberInvolved(urlstub) }));
// TODO: put in info about what is being sent.
item.addActionListener(new java.awt.event.ActionListener()
urlgenerator.getNumberInvolved(urlstub) }));
// TODO: put in info about what is being sent.
item.addActionListener(new java.awt.event.ActionListener()
@@
-1128,7
+1112,7
@@
public class PopupMenu extends JPopupMenu
}
});
chooseAnnotations.setText(MessageManager
}
});
chooseAnnotations.setText(MessageManager
- .getString("label.choose_annotations") + "...");
+ .getString("action.choose_annotations"));
chooseAnnotations.addActionListener(new java.awt.event.ActionListener()
{
@Override
chooseAnnotations.addActionListener(new java.awt.event.ActionListener()
{
@Override
@@
-1138,7
+1122,7
@@
public class PopupMenu extends JPopupMenu
}
});
sequenceDetails.setText(MessageManager
}
});
sequenceDetails.setText(MessageManager
- .getString("label.sequence_details") + "...");
+ .getString("label.sequence_details"));
sequenceDetails.addActionListener(new java.awt.event.ActionListener()
{
@Override
sequenceDetails.addActionListener(new java.awt.event.ActionListener()
{
@Override
@@
-1148,7
+1132,7
@@
public class PopupMenu extends JPopupMenu
}
});
sequenceSelDetails.setText(MessageManager
}
});
sequenceSelDetails.setText(MessageManager
- .getString("label.sequence_details") + "...");
+ .getString("label.sequence_details"));
sequenceSelDetails
.addActionListener(new java.awt.event.ActionListener()
{
sequenceSelDetails
.addActionListener(new java.awt.event.ActionListener()
{
@@
-1354,8
+1338,7
@@
public class PopupMenu extends JPopupMenu
@Override
public void actionPerformed(ActionEvent actionEvent)
{
@Override
public void actionPerformed(ActionEvent actionEvent)
{
- SequenceI[] selectedSeqs = new SequenceI[]
- { sequence };
+ SequenceI[] selectedSeqs = new SequenceI[] { sequence };
if (ap.av.getSelectionGroup() != null)
{
selectedSeqs = ap.av.getSequenceSelection();
if (ap.av.getSelectionGroup() != null)
{
selectedSeqs = ap.av.getSequenceSelection();
@@
-1382,15
+1365,16
@@
public class PopupMenu extends JPopupMenu
.getString("label.mark_as_representative"));
makeReferenceSeq.addActionListener(new ActionListener()
{
.getString("label.mark_as_representative"));
makeReferenceSeq.addActionListener(new ActionListener()
{
-
+
@Override
public void actionPerformed(ActionEvent actionEvent)
{
makeReferenceSeq_actionPerformed(actionEvent);
@Override
public void actionPerformed(ActionEvent actionEvent)
{
makeReferenceSeq_actionPerformed(actionEvent);
-
+
}
});
}
});
- hideInsertions.setText(MessageManager.getString("label.hide_insertions"));
+ hideInsertions.setText(MessageManager
+ .getString("label.hide_insertions"));
hideInsertions.addActionListener(new ActionListener()
{
hideInsertions.addActionListener(new ActionListener()
{
@@
-1411,7
+1395,7
@@
public class PopupMenu extends JPopupMenu
add(sequenceMenu);
add(rnaStructureMenu);
add(pdbStructureDialog);
add(sequenceMenu);
add(rnaStructureMenu);
add(pdbStructureDialog);
- if (sequence!=null)
+ if (sequence != null)
{
add(hideInsertions);
}
{
add(hideInsertions);
}
@@
-1669,8
+1653,8
@@
public class PopupMenu extends JPopupMenu
* @param menuItem
* @param forSequences
*/
* @param menuItem
* @param forSequences
*/
- protected void configureReferenceAnnotationsMenu(
- JMenuItem menuItem, List<SequenceI> forSequences)
+ protected void configureReferenceAnnotationsMenu(JMenuItem menuItem,
+ List<SequenceI> forSequences)
{
menuItem.setEnabled(false);
{
menuItem.setEnabled(false);
@@
-1766,6
+1750,7
@@
public class PopupMenu extends JPopupMenu
}
refresh();
}
}
refresh();
}
+
protected void sequenceSelectionDetails_actionPerformed()
{
createSequenceDetailsReport(ap.av.getSequenceSelection());
protected void sequenceSelectionDetails_actionPerformed()
{
createSequenceDetailsReport(ap.av.getSequenceSelection());
@@
-1773,8
+1758,7
@@
public class PopupMenu extends JPopupMenu
protected void sequenceDetails_actionPerformed()
{
protected void sequenceDetails_actionPerformed()
{
- createSequenceDetailsReport(new SequenceI[]
- { sequence });
+ createSequenceDetailsReport(new SequenceI[] { sequence });
}
public void createSequenceDetailsReport(SequenceI[] sequences)
}
public void createSequenceDetailsReport(SequenceI[] sequences)
@@
-1787,8
+1771,8
@@
public class PopupMenu extends JPopupMenu
+ MessageManager
.formatMessage(
"label.create_sequence_details_report_annotation_for",
+ MessageManager
.formatMessage(
"label.create_sequence_details_report_annotation_for",
- new Object[]
- { seq.getDisplayId(true) }) + "</h2></p><p>");
+ new Object[] { seq.getDisplayId(true) })
+ + "</h2></p><p>");
new SequenceAnnotationReport(null)
.createSequenceAnnotationReport(
contents,
new SequenceAnnotationReport(null)
.createSequenceAnnotationReport(
contents,
@@
-1797,8
+1781,7
@@
public class PopupMenu extends JPopupMenu
true,
false,
(ap.getSeqPanel().seqCanvas.fr != null) ? ap
true,
false,
(ap.getSeqPanel().seqCanvas.fr != null) ? ap
- .getSeqPanel().seqCanvas.fr
- .getMinMax()
+ .getSeqPanel().seqCanvas.fr.getMinMax()
: null);
contents.append("</p>");
}
: null);
contents.append("</p>");
}
@@
-1806,9
+1789,9
@@
public class PopupMenu extends JPopupMenu
Desktop.addInternalFrame(cap, MessageManager.formatMessage(
"label.sequence_details_for",
Desktop.addInternalFrame(cap, MessageManager.formatMessage(
"label.sequence_details_for",
- (sequences.length == 1 ? new Object[]
- { sequences[0].getDisplayId(true) } : new Object[]
- { MessageManager.getString("label.selection") })), 500, 400);
+ (sequences.length == 1 ? new Object[] { sequences[0]
+ .getDisplayId(true) } : new Object[] { MessageManager
+ .getString("label.selection") })), 500, 400);
}
}
@@
-2314,8
+2297,7
@@
public class PopupMenu extends JPopupMenu
SequenceGroup sg = ap.av.getSelectionGroup();
if (sg == null || sg.getSize() < 1)
{
SequenceGroup sg = ap.av.getSelectionGroup();
if (sg == null || sg.getSize() < 1)
{
- ap.av.hideSequence(new SequenceI[]
- { sequence });
+ ap.av.hideSequence(new SequenceI[] { sequence });
return;
}
return;
}
@@
-2354,8
+2336,7
@@
public class PopupMenu extends JPopupMenu
if (sg != null)
{
List<int[]> startEnd = ap.av.getVisibleRegionBoundaries(
if (sg != null)
{
List<int[]> startEnd = ap.av.getVisibleRegionBoundaries(
- sg.getStartRes(),
- sg.getEndRes() + 1);
+ sg.getStartRes(), sg.getEndRes() + 1);
String description;
int caseChange;
String description;
int caseChange;
@@
-2393,8
+2374,8
@@
public class PopupMenu extends JPopupMenu
CutAndPasteTransfer cap = new CutAndPasteTransfer();
cap.setForInput(null);
Desktop.addInternalFrame(cap, MessageManager.formatMessage(
CutAndPasteTransfer cap = new CutAndPasteTransfer();
cap.setForInput(null);
Desktop.addInternalFrame(cap, MessageManager.formatMessage(
- "label.alignment_output_command", new Object[]
- { e.getActionCommand() }), 600, 500);
+ "label.alignment_output_command",
+ new Object[] { e.getActionCommand() }), 600, 500);
String[] omitHidden = null;
String[] omitHidden = null;
@@
-2412,11
+2393,11
@@
public class PopupMenu extends JPopupMenu
jalview.bin.Cache.getProperty("LAST_DIRECTORY"));
chooser.setFileView(new jalview.io.JalviewFileView());
chooser.setDialogTitle(MessageManager.formatMessage(
jalview.bin.Cache.getProperty("LAST_DIRECTORY"));
chooser.setFileView(new jalview.io.JalviewFileView());
chooser.setDialogTitle(MessageManager.formatMessage(
- "label.select_pdb_file_for", new Object[]
- { sequence.getDisplayId(false) }));
+ "label.select_pdb_file_for",
+ new Object[] { sequence.getDisplayId(false) }));
chooser.setToolTipText(MessageManager.formatMessage(
chooser.setToolTipText(MessageManager.formatMessage(
- "label.load_pdb_file_associate_with_sequence", new Object[]
- { sequence.getDisplayId(false) }));
+ "label.load_pdb_file_associate_with_sequence",
+ new Object[] { sequence.getDisplayId(false) }));
int value = chooser.showOpenDialog(null);
int value = chooser.showOpenDialog(null);
@@
-2431,7
+2412,6
@@
public class PopupMenu extends JPopupMenu
}
}
-
public void enterPDB_actionPerformed()
{
String id = JOptionPane.showInternalInputDialog(Desktop.desktop,
public void enterPDB_actionPerformed()
{
String id = JOptionPane.showInternalInputDialog(Desktop.desktop,