- int index = 0;\r
- for(int i=0; i<gsize; i++)\r
- {\r
- if(representGroup && sg.getSequenceAt(i)!=sequence)\r
- {\r
- sequence.addHiddenSequence(sg.getSequenceAt(i));\r
- hseqs[index++] = sg.getSequenceAt(i);\r
- }\r
- else if(!representGroup)\r
- {\r
- hseqs[index++] = sg.getSequenceAt(i);\r
- }\r
- }\r