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Merge branch 'develop' of https://source.jalview.org/git/jalview.git into develop
[jalview.git]
/
src
/
jalview
/
gui
/
PopupMenu.java
diff --git
a/src/jalview/gui/PopupMenu.java
b/src/jalview/gui/PopupMenu.java
index
fee47e5
..
e86b2c5
100644
(file)
--- a/
src/jalview/gui/PopupMenu.java
+++ b/
src/jalview/gui/PopupMenu.java
@@
-642,7
+642,7
@@
public class PopupMenu extends JPopupMenu
// collect matching db-refs
DBRefEntry[] dbr = jalview.util.DBRefUtils.selectRefs(
// collect matching db-refs
DBRefEntry[] dbr = jalview.util.DBRefUtils.selectRefs(
- seq.getDBRef(), new String[] { urlLink.getTarget() });
+ seq.getDBRefs(), new String[] { urlLink.getTarget() });
// collect id string too
String id = seq.getName();
String descr = seq.getDescription();
// collect id string too
String id = seq.getName();
String descr = seq.getDescription();
@@
-896,7
+896,7
@@
public class PopupMenu extends JPopupMenu
{
sqi = sqi.getDatasetSequence();
}
{
sqi = sqi.getDatasetSequence();
}
- DBRefEntry[] dbr = sqi.getDBRef();
+ DBRefEntry[] dbr = sqi.getDBRefs();
if (dbr != null && dbr.length > 0)
{
for (int d = 0; d < dbr.length; d++)
if (dbr != null && dbr.length > 0)
{
for (int d = 0; d < dbr.length; d++)
@@
-2451,9
+2451,13
@@
public class PopupMenu extends JPopupMenu
@Override
public void run()
{
@Override
public void run()
{
+ boolean isNuclueotide = ap.alignFrame.getViewport().getAlignment()
+ .isNucleotide();
- new jalview.ws.DBRefFetcher(sequences, ap.alignFrame)
+ new jalview.ws.DBRefFetcher(sequences, ap.alignFrame, null,
+ ap.alignFrame.featureSettings, isNuclueotide)
.fetchDBRefs(false);
.fetchDBRefs(false);
+
}
});
}
});