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JAL-2629 fix HMMER validation fail due to checking for HMM incorrectly
[jalview.git]
/
src
/
jalview
/
gui
/
Preferences.java
diff --git
a/src/jalview/gui/Preferences.java
b/src/jalview/gui/Preferences.java
index
bb226a0
..
7c0ac95
100755
(executable)
--- a/
src/jalview/gui/Preferences.java
+++ b/
src/jalview/gui/Preferences.java
@@
-1316,7
+1316,7
@@
public class Preferences extends GPreferences
{
HMMBuildThread hmmbuild = new HMMBuildThread(alignment);
hmmbuild.hmmbuildWaitTillComplete();
{
HMMBuildThread hmmbuild = new HMMBuildThread(alignment);
hmmbuild.hmmbuildWaitTillComplete();
- SequenceI hmmSeq = alignment.getSequenceAt(1);
+ SequenceI hmmSeq = alignment.getSequenceAt(0);
HiddenMarkovModel hmm;
if (hmmSeq.isHMMConsensusSequence() && hmmSeq.getHMM() != null)
{
HiddenMarkovModel hmm;
if (hmmSeq.isHMMConsensusSequence() && hmmSeq.getHMM() != null)
{