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2.08, not 2.07
[jalview.git]
/
src
/
jalview
/
gui
/
Preferences.java
diff --git
a/src/jalview/gui/Preferences.java
b/src/jalview/gui/Preferences.java
index
f322daa
..
9ac8acf
100755
(executable)
--- a/
src/jalview/gui/Preferences.java
+++ b/
src/jalview/gui/Preferences.java
@@
-150,6
+150,11
@@
public class Preferences extends GPreferences
pileupjv.setSelected( Cache.getDefault("PILEUP_JVSUFFIX", true) );
\r
pirjv.setSelected( Cache.getDefault("PIR_JVSUFFIX", true) );
\r
\r
pileupjv.setSelected( Cache.getDefault("PILEUP_JVSUFFIX", true) );
\r
pirjv.setSelected( Cache.getDefault("PIR_JVSUFFIX", true) );
\r
\r
+ modellerOutput.setSelected( Cache.getDefault("PIR_MODELLER", false));
\r
+
\r
+ autoCalculateConsCheck.setSelected( Cache.getDefault("AUTO_CALC_CONSENSUS", true));
\r
+ padGaps.setSelected( Cache.getDefault("PAD_GAPS", false));
\r
+
\r
/****************************************************
\r
* Set up Connections
\r
*/
\r
/****************************************************
\r
* Set up Connections
\r
*/
\r
@@
-276,8
+281,13
@@
public class Preferences extends GPreferences
Cache.applicationProperties.setProperty("PFAM_JVSUFFIX", Boolean.toString(pfamjv.isSelected()) );
\r
Cache.applicationProperties.setProperty("PILEUP_JVSUFFIX", Boolean.toString(pileupjv.isSelected()) );
\r
Cache.applicationProperties.setProperty("PIR_JVSUFFIX", Boolean.toString(pirjv.isSelected()) );
\r
Cache.applicationProperties.setProperty("PFAM_JVSUFFIX", Boolean.toString(pfamjv.isSelected()) );
\r
Cache.applicationProperties.setProperty("PILEUP_JVSUFFIX", Boolean.toString(pileupjv.isSelected()) );
\r
Cache.applicationProperties.setProperty("PIR_JVSUFFIX", Boolean.toString(pirjv.isSelected()) );
\r
+ Cache.applicationProperties.setProperty("PIR_MODELLER", Boolean.toString(modellerOutput.isSelected()) );
\r
+ jalview.io.PIRFile.useModellerOutput = modellerOutput.isSelected();
\r
\r
\r
-
\r
+ Cache.applicationProperties.setProperty("AUTO_CALC_CONSENSUS",
\r
+ Boolean.toString(autoCalculateConsCheck.isSelected()));
\r
+ Cache.applicationProperties.setProperty("PAD_GAPS",
\r
+ Boolean.toString(padGaps.isSelected()));
\r
Cache.saveProperties();
\r
try
\r
{
\r
Cache.saveProperties();
\r
try
\r
{
\r