+ Cache.applicationProperties.setProperty("SHOW_JVSUFFIX",\r
+ Boolean.toString(seqLimit.\r
+ isSelected()));\r
+ Cache.applicationProperties.setProperty("RIGHT_ALIGN_IDS",\r
+ Boolean.toString(rightAlign.\r
+ isSelected()));\r
+ Cache.applicationProperties.setProperty("SHOW_FULLSCREEN",\r
+ Boolean.toString(fullScreen.\r
+ isSelected()));\r
+\r
+ Cache.applicationProperties.setProperty("SHOW_ANNOTATIONS",\r
+ Boolean.\r
+ toString(annotations.isSelected()));\r
+ Cache.applicationProperties.setProperty("SHOW_CONSERVATION",\r
+ Boolean.\r
+ toString(conservation.isSelected()));\r
+ Cache.applicationProperties.setProperty("SHOW_QUALITY",\r
+ Boolean.toString(quality.isSelected()));\r
+ Cache.applicationProperties.setProperty("SHOW_IDENTITY",\r
+ Boolean.toString(identity.\r
+ isSelected()));\r
+\r
+ Cache.applicationProperties.setProperty("DEFAULT_COLOUR",\r
+ colour.getSelectedItem().toString());\r
+ Cache.applicationProperties.setProperty("GAP_SYMBOL",\r
+ gapSymbolCB.getSelectedItem().\r
+ toString());\r
+\r
+ Cache.applicationProperties.setProperty("FONT_NAME",\r
+ fontNameCB.getSelectedItem().\r
+ toString());\r
+ Cache.applicationProperties.setProperty("FONT_STYLE",\r
+ fontStyleCB.getSelectedItem().\r
+ toString());\r
+ Cache.applicationProperties.setProperty("FONT_SIZE",\r
+ fontSizeCB.getSelectedItem().\r
+ toString());\r
+\r
+ Cache.applicationProperties.setProperty("ID_ITALICS",\r
+ Boolean.toString(idItalics.\r
+ isSelected()));\r
+\r
+ Cache.applicationProperties.setProperty("ANTI_ALIAS",\r
+ Boolean.toString(smoothFont.\r
+ isSelected()));\r
+\r
+ Cache.applicationProperties.setProperty("WRAP_ALIGNMENT",\r
+ Boolean.toString(wrap.isSelected()));\r
+\r
+ Cache.applicationProperties.setProperty("STARTUP_FILE",\r
+ startupFileTextfield.getText());\r
+ Cache.applicationProperties.setProperty("SHOW_STARTUP_FILE",\r
+ Boolean.\r
+ toString(startupCheckbox.isSelected()));\r
+\r
+ Cache.applicationProperties.setProperty("SORT_ALIGNMENT",\r
+ sortby.getSelectedItem().toString());\r
+\r
+ if (epsRendering.getSelectedItem().equals("Prompt each time"))\r