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JAL-3541 selectively merged build.gradle and gradle.properties
[jalview.git]
/
src
/
jalview
/
gui
/
RedundancyPanel.java
diff --git
a/src/jalview/gui/RedundancyPanel.java
b/src/jalview/gui/RedundancyPanel.java
index
c4390c0
..
6ed3248
100755
(executable)
--- a/
src/jalview/gui/RedundancyPanel.java
+++ b/
src/jalview/gui/RedundancyPanel.java
@@
-104,7
+104,7
@@
public class RedundancyPanel extends GSliderPanel implements Runnable
Desktop.addInternalFrame(frame,
MessageManager
.getString("label.redundancy_threshold_selection"),
Desktop.addInternalFrame(frame,
MessageManager
.getString("label.redundancy_threshold_selection"),
- 400, 100, false);
+ true, FRAME_WIDTH, FRAME_HEIGHT, false, true);
frame.addInternalFrameListener(new InternalFrameAdapter()
{
@Override
frame.addInternalFrameListener(new InternalFrameAdapter()
{
@Override
@@
-214,7
+214,7
@@
public class RedundancyPanel extends GSliderPanel implements Runnable
@Override
public void applyButton_actionPerformed(ActionEvent e)
{
@Override
public void applyButton_actionPerformed(ActionEvent e)
{
- Vector del = new Vector();
+ List<SequenceI> del = new ArrayList<>();
undoButton.setEnabled(true);
undoButton.setEnabled(true);
@@
-225,13
+225,12
@@
public class RedundancyPanel extends GSliderPanel implements Runnable
{
if (value <= redundancy[i])
{
{
if (value <= redundancy[i])
{
- del.addElement(originalSequences[i]);
+ del.add(originalSequences[i]);
}
}
// This has to be done before the restoreHistoryItem method of alignFrame
}
}
// This has to be done before the restoreHistoryItem method of alignFrame
- // will
- // actually restore these sequences.
+ // will actually restore these sequences.
if (del.size() > 0)
{
SequenceI[] deleted = new SequenceI[del.size()];
if (del.size() > 0)
{
SequenceI[] deleted = new SequenceI[del.size()];
@@
-239,7
+238,7
@@
public class RedundancyPanel extends GSliderPanel implements Runnable
int width = 0;
for (int i = 0; i < del.size(); i++)
{
int width = 0;
for (int i = 0; i < del.size(); i++)
{
- deleted[i] = (SequenceI) del.elementAt(i);
+ deleted[i] = del.get(i);
if (deleted[i].getLength() > width)
{
width = deleted[i].getLength();
if (deleted[i].getLength() > width)
{
width = deleted[i].getLength();