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feature locations are retrieved by associated accession string
[jalview.git]
/
src
/
jalview
/
gui
/
ScalePanel.java
diff --git
a/src/jalview/gui/ScalePanel.java
b/src/jalview/gui/ScalePanel.java
index
ebf25bf
..
3e91f21
100755
(executable)
--- a/
src/jalview/gui/ScalePanel.java
+++ b/
src/jalview/gui/ScalePanel.java
@@
-88,7
+88,7
@@
public class ScalePanel
{
\r
av.showColumn(reveal[0]);
\r
reveal = null;
\r
{
\r
av.showColumn(reveal[0]);
\r
reveal = null;
\r
- ap.repaint();
\r
+ ap.paintAlignment(true);
\r
if (ap.overviewPanel != null)
\r
{
\r
ap.overviewPanel.updateOverviewImage();
\r
if (ap.overviewPanel != null)
\r
{
\r
ap.overviewPanel.updateOverviewImage();
\r
@@
-106,7
+106,7
@@
public class ScalePanel
{
\r
av.showAllHiddenColumns();
\r
reveal = null;
\r
{
\r
av.showAllHiddenColumns();
\r
reveal = null;
\r
- ap.repaint();
\r
+ ap.paintAlignment(true);
\r
if (ap.overviewPanel != null)
\r
{
\r
ap.overviewPanel.updateOverviewImage();
\r
if (ap.overviewPanel != null)
\r
{
\r
ap.overviewPanel.updateOverviewImage();
\r
@@
-131,7
+131,7
@@
public class ScalePanel
av.setSelectionGroup(null);
\r
}
\r
\r
av.setSelectionGroup(null);
\r
}
\r
\r
- ap.repaint();
\r
+ ap.paintAlignment(true);
\r
if (ap.overviewPanel != null)
\r
{
\r
ap.overviewPanel.updateOverviewImage();
\r
if (ap.overviewPanel != null)
\r
{
\r
ap.overviewPanel.updateOverviewImage();
\r
@@
-174,7
+174,7
@@
public class ScalePanel
\r
}
\r
\r
\r
}
\r
\r
- ap.repaint();
\r
+ ap.paintAlignment(false);
\r
}
\r
\r
/**
\r
}
\r
\r
/**
\r
@@
-200,7
+200,7
@@
public class ScalePanel
\r
if (!stretchingGroup)
\r
{
\r
\r
if (!stretchingGroup)
\r
{
\r
- ap.repaint();
\r
+ ap.paintAlignment(false);
\r
\r
return;
\r
}
\r
\r
return;
\r
}
\r
@@
-219,7
+219,7
@@
public class ScalePanel
}
\r
}
\r
stretchingGroup = false;
\r
}
\r
}
\r
stretchingGroup = false;
\r
- ap.repaint();
\r
+ ap.paintAlignment(false);
\r
}
\r
\r
/**
\r
}
\r
\r
/**
\r
@@
-277,19
+277,22
@@
public class ScalePanel
sg.setStartRes(res);
\r
}
\r
\r
sg.setStartRes(res);
\r
}
\r
\r
+ int col;
\r
for (int i = min; i <= max; i++)
\r
{
\r
for (int i = min; i <= max; i++)
\r
{
\r
- if ( (i < sg.getStartRes()) || (i > sg.getEndRes()))
\r
+ col = av.getColumnSelection().adjustForHiddenColumns(i);
\r
+
\r
+ if ( (col < sg.getStartRes()) || (col > sg.getEndRes()))
\r
{
\r
{
\r
- av.getColumnSelection().removeElement(i);
\r
+ av.getColumnSelection().removeElement(col);
\r
}
\r
else
\r
{
\r
}
\r
else
\r
{
\r
- av.getColumnSelection().addElement(i);
\r
+ av.getColumnSelection().addElement(col);
\r
}
\r
}
\r
\r
}
\r
}
\r
\r
- ap.repaint();
\r
+ ap.paintAlignment(false);
\r
}
\r
}
\r
\r
}
\r
}
\r
\r