- /* if(av.getShowTranslation())\r
- {\r
- dna = nextSeq;\r
- StringBuffer sb = new StringBuffer();\r
- for(int r = 0; r<nextSeq.getLength(); r+=3)\r
- {\r
- String codon = nextSeq.getSequence(r, r+3);\r
- codon = codon.replace('U', 'T');\r
- String res = ResidueProperties.codonTranslate(codon);\r
- if(res !=null )\r
- {\r
- if (res.equals("STOP"))\r
- sb.append("X");\r
- else\r
- sb.append(res);\r
- }\r
- }\r
- nextSeq = new Sequence("d", sb.toString());\r
- }*/\r
-\r
- sr.drawSequence(g, nextSeq, av.alignment.findAllGroups(nextSeq),\r
- x1, x2, (x1 - startx) * av.charWidth,\r
- offset + ( (i - starty) * av.charHeight), av.charWidth,\r
- av.charHeight);\r
-\r
- /* if(av.getShowTranslation())\r
- {\r
- av.setGlobalColourScheme(new NucleotideColourScheme());\r
- g.setFont(dnafont);\r
- sr.drawSequence(g, dna, null,\r
- x1*3, (x2+2) * 3, ( (x1 - startx) * av.charWidth) / 3,\r
- offset + ( (i - starty) * av.charHeight) + aaHeight,\r
- av.charWidth / 3,\r
- dnaHeight);\r
- av.setGlobalColourScheme(cs);\r
- }*/\r