+\r
+ ColourSchemeI cs = av.getGlobalColourScheme();\r
+ if(cs instanceof ConservationColourScheme)\r
+ cs = ( (ConservationColourScheme) cs).cs;\r
+\r
+ if(cs instanceof ClustalxColourScheme)\r
+ cs = new ClustalxColourScheme(av.alignment.getSequences(), av.alignment.getWidth());\r
+\r
+ ap.alignFrame.changeColour(cs);\r
+\r