- /* Alignment al = (Alignment) av.getAlignment();\r
- SequenceGroup sg = av.alignment.findGroup( al.getSequenceAt(i));\r
- if(sg==null || !(sg.cs instanceof ConservationColourScheme))\r
- return;\r
-\r
- Conservation c = sg.getConservation();\r
-\r
- c = new Conservation("All", al.cons,\r
- ResidueProperties.propHash, 3, sg.sequences, 0,\r
- al.getWidth());\r
- c.calculate();\r
- c.verdict(false, 100);\r
- sg.setConservation(c);\r
- ConservationColourScheme ccs = (ConservationColourScheme)sg.cs;\r
- ccs.conserve = c;*/\r