- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
+ * Copyright (C) 2015 The Jalview Authors
* set if av.getSelectionGroup() refers to a group that is defined on the
* alignment view, rather than a transient selection
*/
* set if av.getSelectionGroup() refers to a group that is defined on the
* alignment view, rather than a transient selection
*/
sg.setEndRes(res);
sg.addSequence(sequence, false);
av.setSelectionGroup(sg);
sg.setEndRes(res);
sg.addSequence(sequence, false);
av.setSelectionGroup(sg);
// always do this - annotation has own state
// but defer colourscheme update until hidden sequences are passed in
boolean vischange = stretchGroup.recalcConservation(true);
// always do this - annotation has own state
// but defer colourscheme update until hidden sequences are passed in
boolean vischange = stretchGroup.recalcConservation(true);
if (stretchGroup.cs != null)
{
stretchGroup.cs.alignmentChanged(stretchGroup,
if (stretchGroup.cs != null)
{
stretchGroup.cs.alignmentChanged(stretchGroup,
}
PaintRefresher.Refresh(this, av.getSequenceSetId());
ap.paintAlignment(needOverviewUpdate);
}
PaintRefresher.Refresh(this, av.getSequenceSetId());
ap.paintAlignment(needOverviewUpdate);
if (stretchGroup.getSequences(null).contains(nextSeq))
{
stretchGroup.deleteSequence(seq, false);
if (stretchGroup.getSequences(null).contains(nextSeq))
{
stretchGroup.deleteSequence(seq, false);
- Cache.log.warn("alignviewport av SeqSetId="
- + av.getSequenceSetId() + " ViewId=" + av.getViewId()
+ Cache.log.warn("alignviewport av SeqSetId=" + av.getSequenceSetId()
+ + " ViewId=" + av.getViewId()