+\r
+ /**\r
+ * DOCUMENT ME!\r
+ *\r
+ * @param evt DOCUMENT ME!\r
+ */\r
+ public void mouseMoved(MouseEvent evt)\r
+ {\r
+ if (editingSeqs)\r
+ {\r
+ // This is because MacOSX creates a mouseMoved\r
+ // If control is down, other platforms will not.\r
+ mouseDragged(evt);\r
+ }\r
+\r
+ int res = findRes(evt);\r
+ int seq = findSeq(evt);\r
+\r
+\r
+ if(res<0 || seq<0 || seq >= av.getAlignment().getHeight())\r
+ return;\r
+\r
+ SequenceI sequence = av.getAlignment().getSequenceAt(seq);\r
+\r
+ if (res > sequence.getLength())\r
+ {\r
+ return;\r
+ }\r
+\r
+ if(seqCanvas.pdbCanvas!=null && sequence==seqCanvas.pdbCanvas.sequence)\r
+ {\r
+ seqCanvas.pdbCanvas.highlightRes(sequence.findPosition(res));\r
+ }\r
+\r
+ setStatusMessage(sequence, res, seq);\r
+\r
+ // use aa to see if the mouse pointer is on a\r
+ if (av.showSequenceFeatures)\r
+ {\r
+ SequenceFeature [] features = sequence.getDatasetSequence().getSequenceFeatures();\r
+ if(features!=null)\r
+ {\r
+ StringBuffer sbuffer = new StringBuffer("<html>");\r
+\r
+ for (int i = 0; i < features.length; i++)\r
+ {\r
+\r
+ if ( (features[i].getBegin() <= sequence.findPosition(res)) &&\r
+ (features[i].getEnd() >= sequence.findPosition(res)))\r
+ {\r
+ if(av.featuresDisplayed==null\r
+ || !av.featuresDisplayed.containsKey(features[i].getType()))\r
+ continue;\r
+\r
+\r
+ if (features[i].getType().equals("disulfide bond"))\r
+ {\r
+ if (features[i].getBegin() == sequence.findPosition(res)\r
+ || features[i].getEnd() == sequence.findPosition(res))\r
+ {\r
+ if (sbuffer.length() > 6)\r
+ sbuffer.append("<br>");\r
+ sbuffer.append("disulfide bond " + features[i].getBegin() + ":" +\r
+ features[i].getEnd());\r
+ }\r
+ }\r
+ else\r
+ {\r
+ if (sbuffer.length() > 6)\r
+ sbuffer.append("<br>");\r
+ if(features[i].featureGroup!=null)\r
+ sbuffer.append(features[i].featureGroup+";");\r
+\r
+ sbuffer.append(features[i].getType());\r
+\r
+ if (features[i].getDescription() != null\r
+ && !features[i].description.equals(features[i].getType()))\r
+ sbuffer.append("; " + features[i].getDescription());\r
+\r
+ if (features[i].getStatus() != null && features[i].getStatus().length()>0)\r
+ {\r
+ sbuffer.append("; (" + features[i].getStatus() + ")");\r
+ }\r
+ }\r
+ }\r
+\r
+ }\r
+\r
+ sbuffer.append("</html>");\r
+ if(sbuffer.length()==13) // <html></html>\r
+ setToolTipText("");\r
+ else\r
+ setToolTipText(sbuffer.toString());\r
+ }\r
+ else\r
+ setToolTipText("");\r
+ }\r
+ }\r
+\r
+ void setStatusMessage(SequenceI sequence, int res, int seq)\r