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JAL-2600 Abandoned fastpaint for resize; now full repaint, single call
[jalview.git]
/
src
/
jalview
/
gui
/
SequenceRenderer.java
diff --git
a/src/jalview/gui/SequenceRenderer.java
b/src/jalview/gui/SequenceRenderer.java
index
764ef3f
..
36825ea
100755
(executable)
--- a/
src/jalview/gui/SequenceRenderer.java
+++ b/
src/jalview/gui/SequenceRenderer.java
@@
-20,6
+20,7
@@
*/
package jalview.gui;
*/
package jalview.gui;
+import jalview.api.AlignViewportI;
import jalview.datamodel.SequenceGroup;
import jalview.datamodel.SequenceI;
import jalview.renderer.ResidueShaderI;
import jalview.datamodel.SequenceGroup;
import jalview.datamodel.SequenceI;
import jalview.renderer.ResidueShaderI;
@@
-34,7
+35,7
@@
public class SequenceRenderer implements jalview.api.SequenceRenderer
{
final static int CHAR_TO_UPPER = 'A' - 'a';
{
final static int CHAR_TO_UPPER = 'A' - 'a';
- AlignViewport av;
+ AlignViewportI av;
FontMetrics fm;
FontMetrics fm;
@@
-53,14
+54,13
@@
public class SequenceRenderer implements jalview.api.SequenceRenderer
boolean forOverview = false;
/**
boolean forOverview = false;
/**
- * Creates a new SequenceRenderer object.
+ * Creates a new SequenceRenderer object
*
*
- * @param av
- * DOCUMENT ME!
+ * @param viewport
*/
*/
- public SequenceRenderer(AlignViewport av)
+ public SequenceRenderer(AlignViewportI viewport)
{
{
- this.av = av;
+ this.av = viewport;
}
/**
}
/**
@@
-83,8
+83,7
@@
public class SequenceRenderer implements jalview.api.SequenceRenderer
this.renderGaps = renderGaps;
}
this.renderGaps = renderGaps;
}
- @Override
- public Color getResidueBoxColour(SequenceI seq, int i)
+ protected Color getResidueBoxColour(SequenceI seq, int i)
{
// rate limiting step when rendering overview for lots of groups
allGroups = av.getAlignment().findAllGroups(seq);
{
// rate limiting step when rendering overview for lots of groups
allGroups = av.getAlignment().findAllGroups(seq);
@@
-118,8
+117,6
@@
public class SequenceRenderer implements jalview.api.SequenceRenderer
public Color getResidueColour(final SequenceI seq, int position,
FeatureColourFinder finder)
{
public Color getResidueColour(final SequenceI seq, int position,
FeatureColourFinder finder)
{
- // TODO replace 8 or so code duplications with calls to this method
- // (refactored as needed)
Color col = getResidueBoxColour(seq, position);
if (finder != null)
Color col = getResidueBoxColour(seq, position);
if (finder != null)
@@
-141,7
+138,7
@@
public class SequenceRenderer implements jalview.api.SequenceRenderer
*/
void getBoxColour(ResidueShaderI shader, SequenceI seq, int i)
{
*/
void getBoxColour(ResidueShaderI shader, SequenceI seq, int i)
{
- if (shader != null)
+ if (shader.getColourScheme() != null)
{
resBoxColour = shader.findColour(seq.getCharAt(i),
i, seq);
{
resBoxColour = shader.findColour(seq.getCharAt(i),
i, seq);
@@
-185,7
+182,7
@@
public class SequenceRenderer implements jalview.api.SequenceRenderer
drawBoxes(seq, start, end, y1);
drawBoxes(seq, start, end, y1);
- if (av.validCharWidth)
+ if (av.isValidCharWidth())
{
drawText(seq, start, end, y1);
}
{
drawText(seq, start, end, y1);
}