+ if(monospacedFont\r
+ && av.showText\r
+ && allGroups.length==0\r
+ && !av.getColourText()\r
+ && av.thresholdTextColour==0)\r
+ {\r
+ if (av.renderGaps)\r
+ graphics.drawString(seq.getSequenceAsString(start, end + 1), 0, y1);\r
+ else\r
+ {\r
+ char gap = av.getGapCharacter();\r
+ graphics.drawString( seq.getSequenceAsString(start, end+1).replace(gap, ' '), 0, y1);\r
+ }\r
+ }\r
+ else\r
+ {\r
+ boolean getboxColour = false;\r
+ for (int i = start; i <= end; i++)\r
+ {\r
+ graphics.setColor(av.textColour);\r
+ getboxColour = false;\r
+ s = seq.getCharAt(i);\r