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JAL-2588 Check/fix show boxes settings + unit test updates.
[jalview.git]
/
src
/
jalview
/
gui
/
SequenceRenderer.java
diff --git
a/src/jalview/gui/SequenceRenderer.java
b/src/jalview/gui/SequenceRenderer.java
index
5bb0de7
..
c27c16b
100755
(executable)
--- a/
src/jalview/gui/SequenceRenderer.java
+++ b/
src/jalview/gui/SequenceRenderer.java
@@
-95,7
+95,8
@@
public class SequenceRenderer implements jalview.api.SequenceRenderer
public Color getResidueColour(final SequenceI seq, int position,
FeatureColourFinder finder)
{
public Color getResidueColour(final SequenceI seq, int position,
FeatureColourFinder finder)
{
- return resColourFinder.getResidueColour(av.getResidueShading(),
+ return resColourFinder.getResidueColour(av.getShowBoxes(),
+ av.getResidueShading(),
allGroups, seq, position,
finder);
}
allGroups, seq, position,
finder);
}