import jalview.api.FeatureRenderer;
import jalview.datamodel.SequenceGroup;
import jalview.datamodel.SequenceI;
import jalview.api.FeatureRenderer;
import jalview.datamodel.SequenceGroup;
import jalview.datamodel.SequenceI;
public class SequenceRenderer implements jalview.api.SequenceRenderer
{
final static int CHAR_TO_UPPER = 'A' - 'a';
public class SequenceRenderer implements jalview.api.SequenceRenderer
{
final static int CHAR_TO_UPPER = 'A' - 'a';
allGroups = av.getAlignment().findAllGroups(seq);
if (inCurrentSequenceGroup(i))
{
if (currentSequenceGroup.getDisplayBoxes())
{
allGroups = av.getAlignment().findAllGroups(seq);
if (inCurrentSequenceGroup(i))
{
if (currentSequenceGroup.getDisplayBoxes())
{