+ * return the AlignFrames held by this container
+ *
+ * @return { Top alignFrame (Usually CDS), Bottom AlignFrame (Usually
+ * Protein)}
+ */
+ public List<AlignFrame> getAlignFrames()
+ {
+ return Arrays
+ .asList(new AlignFrame[]
+ { (AlignFrame) getTopFrame(), (AlignFrame) getBottomFrame() });
+ }
+
+ /**