+ /*
+ * These lines can be removed once scaleProteinAsCdna is added to element
+ * Viewport in jalview.xsd, as Jalview2XML.copyAlignPanel will then take
+ * care of it
+ */
+ newTopPanel.av.setScaleProteinAsCdna(scaleProteinAsCdna);
+ newBottomPanel.av.setScaleProteinAsCdna(scaleProteinAsCdna);
+
+ /*
+ * Line up id labels etc
+ */
+ adjustLayout();
+