git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
|
inline
| side by side
JAL-2028 added improvement for preconfigured ordering of custom display options
[jalview.git]
/
src
/
jalview
/
gui
/
StructureViewer.java
diff --git
a/src/jalview/gui/StructureViewer.java
b/src/jalview/gui/StructureViewer.java
index
2285765
..
21b2984
100644
(file)
--- a/
src/jalview/gui/StructureViewer.java
+++ b/
src/jalview/gui/StructureViewer.java
@@
-20,10
+20,6
@@
*/
package jalview.gui;
*/
package jalview.gui;
-import java.awt.Rectangle;
-import java.util.ArrayList;
-import java.util.List;
-
import jalview.api.structures.JalviewStructureDisplayI;
import jalview.bin.Cache;
import jalview.datamodel.PDBEntry;
import jalview.api.structures.JalviewStructureDisplayI;
import jalview.bin.Cache;
import jalview.datamodel.PDBEntry;
@@
-31,6
+27,10
@@
import jalview.datamodel.SequenceI;
import jalview.datamodel.StructureViewerModel;
import jalview.structure.StructureSelectionManager;
import jalview.datamodel.StructureViewerModel;
import jalview.structure.StructureSelectionManager;
+import java.awt.Rectangle;
+import java.util.ArrayList;
+import java.util.List;
+
/**
* proxy for handling structure viewers.
*
/**
* proxy for handling structure viewers.
*
@@
-98,8
+98,7
@@
public class StructureViewer
* @return
*/
private JalviewStructureDisplayI onlyOnePdb(PDBEntry[] pdbs,
* @return
*/
private JalviewStructureDisplayI onlyOnePdb(PDBEntry[] pdbs,
- SequenceI[][] seqsForPdbs,
- AlignmentPanel ap)
+ SequenceI[][] seqsForPdbs, AlignmentPanel ap)
{
List<SequenceI> seqs = new ArrayList<SequenceI>();
if (pdbs == null || pdbs.length == 0)
{
List<SequenceI> seqs = new ArrayList<SequenceI>();
if (pdbs == null || pdbs.length == 0)
@@
-190,8
+189,8
@@
public class StructureViewer
*/
public JalviewStructureDisplayI createView(ViewerType type,
String[] pdbf, String[] id, SequenceI[][] sq,
*/
public JalviewStructureDisplayI createView(ViewerType type,
String[] pdbf, String[] id, SequenceI[][] sq,
- AlignmentPanel alignPanel, StructureViewerModel viewerData, String fileloc,
- Rectangle rect, String vid)
+ AlignmentPanel alignPanel, StructureViewerModel viewerData,
+ String fileloc, Rectangle rect, String vid)
{
final boolean useinViewerSuperpos = viewerData.isAlignWithPanel();
final boolean usetoColourbyseq = viewerData.isColourWithAlignPanel();
{
final boolean useinViewerSuperpos = viewerData.isAlignWithPanel();
final boolean usetoColourbyseq = viewerData.isColourWithAlignPanel();