- // old way:
- // PDBEntry[] pdbsForFile = getUniquePdbFiles(pdbs);
-
- // new way:
- Map<PDBEntry, SequenceI[]> seqsForPdb = getSequencesForPdbs(pdbs,
- seqsForPdbs);
- PDBEntry[] pdbsForFile = seqsForPdb.keySet().toArray(
- new PDBEntry[seqsForPdb.size()]);
- SequenceI[][] theSeqs = seqsForPdb.values().toArray(
- new SequenceI[seqsForPdb.size()][]);
+ Map<PDBEntry, SequenceI[]> seqsForPdbs = getSequencesForPdbs(pdbs,
+ seqs);
+ PDBEntry[] pdbsForFile = seqsForPdbs.keySet().toArray(
+ new PDBEntry[seqsForPdbs.size()]);
+ SequenceI[][] theSeqs = seqsForPdbs.values().toArray(
+ new SequenceI[seqsForPdbs.size()][]);